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Report for Sequence Feature Glyma08g17610

Feature Type:gene_model
Chromosome:Gm08
Start:13118924
stop:13122690
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g17610
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G56190AT Annotation by Michelle Graham. TAIR10: Phosphoglycerate kinase family protein | chr1:21028403-21030454 FORWARD LENGTH=478 SoyBaseE_val: 0ISS
GO:0000023GO-bp Annotation by Michelle Graham. GO Biological Process: maltose metabolic process SoyBaseN/AISS
GO:0006096GO-bp Annotation by Michelle Graham. GO Biological Process: glycolysis SoyBaseN/AISS
GO:0019252GO-bp Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process SoyBaseN/AISS
GO:0019344GO-bp Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process SoyBaseN/AISS
GO:0030003GO-bp Annotation by Michelle Graham. GO Biological Process: cellular cation homeostasis SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0070838GO-bp Annotation by Michelle Graham. GO Biological Process: divalent metal ion transport SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0009579GO-cc Annotation by Michelle Graham. GO Cellular Compartment: thylakoid SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0004618GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphoglycerate kinase activity SoyBaseN/AISS
KOG1367 KOG 3-phosphoglycerate kinase JGI ISS
PTHR11406Panther PHOSPHOGLYCERATE KINASE JGI ISS
PF00162PFAM Phosphoglycerate kinase JGI ISS
UniRef100_I1KTX8UniRef Annotation by Michelle Graham. Best UniRef hit: Phosphoglycerate kinase n=1 Tax=Glycine max RepID=I1KTX8_SOYBN SoyBaseE_val: 0ISS
UniRef100_I1KTX8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Phosphoglycerate kinase n=1 Tax=Glycine max RepID=I1KTX8_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g17610
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g17610
ParalogEvidenceComments
Glyma15g41540 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g17610 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g165500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g17610
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g17610
>Glyma08g17610.1   sequence type=CDS   gene model=Glyma08g17610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTCAGCCGCATCCCCCACCACTTTCTCTCTCCTCCACTCCGCCACCCCTTCCTCCTCCTCCACCGCCACCTCCGCCTCCCCCTCCCCCTCGCGCGTGCAGCTCACCTCCTCCCTCCGCGCCCGCCCGCTGCGCCGCCTGGGCTTCGCCGCGGCGGACCCGCTGCTCGCGGCGAGTGTAGCGGCGCGCGTGGCGGCGGTGAGAGGAGGAGGAAAGGGCGCGAGGGGGGTGGTGTCGATGGCGAAGAAGAGCGTGGGGGACCTGAGCGCGGCGGACCTGAAGGGGAAGAAGGTCTTCGTCAGGGCCGACCTCAACGTCCCGCTCGACGACAACCAGAACATCACCGACGACACCAGAATCCGCGCCGCCATTCCCACCATCAAACATCTCATCCAAAACGGCGCCAAAGTCATTCTCTCCAGCCACTTGGGGCGGCCGAAGGGTGTCACTCCCAAATACAGCTTGGCGCCTCTTGTACCCCGGCTTTCTGAGCTCATTGGTATCCAGATTGTCAAGGCCGAGGACAGTATTGGTCCAGAAGTAGAAAAGTTGGTGGCTTCTCTTCCAGATGGAGGTGTTCTCCTTCTAGAAAATGTGAGGTTTTACAAGGAGGAAGAAAAGAATGACCCCGAGCATGCAAAAAAGCTTGCCTCTCTGGCAGATCTGTATGTGAATGATGCATTTGGTACTGCTCACAGGGCACATGCATCAACAGAGGGTGTTACTAAATACCTGAAGCCATCTGTTGCTGGTTTTCTTTTGCAAAAGGAACTTGATTACCTTGTTGGGGCAGTATCAAACCCCAAAAGGCCATTTGCTGCCATTGTTGGTGGTTCCAAAGTCTCATCTAAAATTGGAGTGATTGAGTCACTTTTAGAAAAAGTTGACATCCTTCTTCTTGGTGGAGGAATGATCTTCACATTTTACAAGGCACAAGGTCTTTCAGTGGGTTCATCCCTTGTAGAAGAAGATAAGTTGGATCTTGCTACATCACTACTTGCAAAAGCCAAGGAAAAGGGGGTGTCTCTCTTGTTACCAAGTGATGTGGTGATTGCAGACAAATTTGCTCCTGATGCTAATAGCAAGGTCGTGCCAGCATCTGCCATCCCTGATGGCTGGATGGGATTGGATATTGGTCCAGATTCTGTTAAATCATTCAGTGAAGCATTGGATACTACCCAAACCATCATATGGAATGGACCAATGGGAGTGTTTGAGTTTGACAAGTTTGCTGTTGGTACAGAGGCTATTGCAAAGAAGCTGGCTGACCTCAGTGGAAAGGGGGTGACCACAATTATTGGAGGAGGAGATTCTGTTGCAGCTGTGGAGAAAGTAGGAGTTGCTAGTGTCATGAGCCACATATCTACTGGTGGTGGTGCCAGTTTGGAGTTATTGGAAGGCAAAGAGCTTCCAGGAGTCCTTGCTCTTGATGAAGCCGTCCCAGTCGCTGTGTAA
Predicted protein sequences of Glyma08g17610
>Glyma08g17610.1   sequence type=predicted peptide   gene model=Glyma08g17610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASAASPTTFSLLHSATPSSSSTATSASPSPSRVQLTSSLRARPLRRLGFAAADPLLAASVAARVAAVRGGGKGARGVVSMAKKSVGDLSAADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAIPTIKHLIQNGAKVILSSHLGRPKGVTPKYSLAPLVPRLSELIGIQIVKAEDSIGPEVEKLVASLPDGGVLLLENVRFYKEEEKNDPEHAKKLASLADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSNPKRPFAAIVGGSKVSSKIGVIESLLEKVDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLDLATSLLAKAKEKGVSLLLPSDVVIADKFAPDANSKVVPASAIPDGWMGLDIGPDSVKSFSEALDTTQTIIWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSVAAVEKVGVASVMSHISTGGGASLELLEGKELPGVLALDEAVPVAV*






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