SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g17591

Feature Type:gene_model
Chromosome:Gm08
Start:13081996
stop:13091606
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g17591
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G16290AT Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, vacuole; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Lytic transglycosylase-like, catalytic (InterPro:IPR008258); Has 171 Blast hits to 155 proteins in 40 species: Archae - 0; Bacteria - 54; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink). | chr1:5570938-5573538 REVERSE LENGTH=419 SoyBaseE_val: 0ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF01464PFAM Transglycosylase SLT domain JGI ISS
UniRef100_B9RHW0UniRef Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9RHW0_RICCO SoyBaseE_val: 0ISS
UniRef100_Q9SA28UniRef Annotation by Michelle Graham. Most informative UniRef hit: F3O9.9 protein n=1 Tax=Arabidopsis thaliana RepID=Q9SA28_ARATH SoyBaseE_val: 1.00E-176ISS

Expression Patterns of Glyma08g17591
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g17591 not represented in the dataset
Glyma08g17591 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g17591 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g165100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g17591
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g17591
>Glyma08g17591.1   sequence type=CDS   gene model=Glyma08g17591   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTATCAATTCCTCCATTGTTAACTTTAGAAGGAAAATTTATCTCGTCTTCTTGCAAAGCCTTTTGGTCTCTCTCTCAGCTTGCTATCATATTGATGGCTATCAGTTTCAGCTATTGGGATGATTGTGTTGACCCTCAGAATTTTGAGGCAATGTGGAATGTACCTGAAGTGAGTGCTGAATGGATAAAGGCTGGAGAACAAAGATGCCAAAAGGTTCACCTATCACGTGATCCCGATGGGCAGCCATATTTAACACAAACTGAAATGAGGGCTGTAGCTGACATCATTATTACCAAGCACTTTCATTCAGAGATAGATCCTGACATGATATGTGCTATTGCTGAACTTGAAAGTGATAGACAACTACTTGTTATGAATTCCAGACACAAATCTAAAGAGCCTACCGTGGGGCTTATGCAACTCCTGCCAAAAACTACAGAGTGGTTGATGAGTGAATTAGGTTATTGTTCATATGAAGCAGATGAGAATCGAGAATTCTTATTCAAACCCTTTGTAAATGTATATTTTGGTGCTGCTTATATTAAATGGCTGTCAAACTTTGAGAACAAAAAAAGAAGTGAAGAATTTATTGTAAGGGCATATAAAGGTGGTACAAAGAAGGCAACTCATAAATCCACTTTGCGCTATTGGAATTGCTATCTCTCAGTTAAAGAAAGTTTTCGATCCAGAAAATCTGTTGATGACAATGTTTCACCTCCTGCTCACTCTCATCCCTTACCTTCATTAGAAAACTCAAAAGATGCAAGTGTTGACACATATTGGGATTCCAGAGTAGCCCCAGAAGATATGGAAGCTATGTGGAATCATCTTGAGGTTCGAAAAGAGTGGAATAAATCCAAACAAAAACAAGGAAAGGTGCGGTTTGCACATGATGAAAAGAAGAGACCATATCTATCCCGAGTAGAAATGAAGGCAATTGCAGATATAATTCTATACAAATACCTCAGCACAGTGAAAATTAAATCCACAGTAATTTGTGCCATTGGGGAGGTTCTAAGCAAGCGTTTTCTACATGGAGTTGGAGAACAACCTGGAATAATGGGGATTGACTACTCCACTGCTTACTGGCTTTACTTGGAATTGGGCTATAGGGCTTATAGACTTGAATCTGTTGATGATCTTAACAATCCATTTGTGTCCATGTACTTTGGTGCTGCTTATGTAGCATGGTTATCAGAATATGAAGGAAGGGAAAGGCCACCGGACTTTTTTGTTCAAGCATATTTTGTAGGGCCAAAAAATGTGAACCCTCAAGATACAAGCACTCTCTGGCTAAAATTTGAGGAAACTCTCAGCAAATATGAAGAAACAAAGAGGAGTAGCGATAGCTGCTCTATCATGTAA
Predicted protein sequences of Glyma08g17591
>Glyma08g17591.1   sequence type=predicted peptide   gene model=Glyma08g17591   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLSIPPLLTLEGKFISSSCKAFWSLSQLAIILMAISFSYWDDCVDPQNFEAMWNVPEVSAEWIKAGEQRCQKVHLSRDPDGQPYLTQTEMRAVADIIITKHFHSEIDPDMICAIAELESDRQLLVMNSRHKSKEPTVGLMQLLPKTTEWLMSELGYCSYEADENREFLFKPFVNVYFGAAYIKWLSNFENKKRSEEFIVRAYKGGTKKATHKSTLRYWNCYLSVKESFRSRKSVDDNVSPPAHSHPLPSLENSKDASVDTYWDSRVAPEDMEAMWNHLEVRKEWNKSKQKQGKVRFAHDEKKRPYLSRVEMKAIADIILYKYLSTVKIKSTVICAIGEVLSKRFLHGVGEQPGIMGIDYSTAYWLYLELGYRAYRLESVDDLNNPFVSMYFGAAYVAWLSEYEGRERPPDFFVQAYFVGPKNVNPQDTSTLWLKFEETLSKYEETKRSSDSCSIM*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo