Glyma08g17540 - SoyBase

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Report for Sequence Feature Glyma08g17540

Feature Type:	gene_model
Chromosome:	Gm08
Start:	13027922
stop:	13030376
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g17540

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G79510	AT	Annotation by Michelle Graham. TAIR10: Uncharacterized conserved protein (DUF2358) \| chr1:29908271-29909175 REVERSE LENGTH=275	SoyBase	E_val: 1.00E-119	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG4457	KOG	Uncharacterized conserved protein	JGI		ISS
PF10184	PFAM	Uncharacterized conserved protein (DUF2358)	JGI		ISS
UniRef100_I1KTX2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KTX2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q7XLD2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: OSJNBa0070C17.17 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XLD2_ORYSJ	SoyBase	E_val: 2.00E-72	ISS

Expression Patterns of Glyma08g17540

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g17540

Paralog	Evidence	Comments
Glyma15g41610	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g17540 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g164500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g17540

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g17540

Limit To All Plant Sequences

>Glyma08g17540.2   sequence type=transcript   gene model=Glyma08g17540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTAAATTTCATGGCCATGTTCGAAGCCACTCAGACACAAATTAAAATACTAAGTTAACAACAGCCTCAATTTGCATCATCATCAGAAACAACTCACAGACACAACAAAACAGAACAAAAACACAAATCTCTTCTTCTCTTCTCTTCTCTCTCTCTCTCTCTCACACACACAAATGAAAAAAAGCTAACATAACAATAATATCTTTGCAAACCATTAAGGCCATGGCTTTTCTTCTACCAAACGTCCAACCTTCTCTTTTAGCTCAATCCAAATCCAAGAAAGACAAAGCAAACCTTCACCAAACTCTCTCACCTCAAAAACCCACTTCTCAGTTTCCTATATCATCCACCACATGCTCTTCTTCTCTACAAACTTCCACTGCACAAGTTGCAAAAGTCAGCACACCACATGATAAGCAGCAACAACAGCCAAAGGATGAATTCTACCTCAACCTTGGTCTTGATGTCAGGACAATCCGTGAGGACCTTCCTTTGATCTTCATCAAAGACCTCAATTATGACATTTATAGGTTTTCATTGGAGTTTGGTTATTTCAGGGATGACATAACATTCATGGACCCCTTGAACACATTTACTGGGATTGAGAAGTACAAGCTGATCTTCTGGGCATTGAGGTTTCATGGCAAAATCTTGTTCCGAGAGATTGCACTTGATGTGTACAGGGTGTGGCAGCCTTCAGAGAATGTGATATTGGTCAGGTGGAACCTTAGGGGTGTGCCGCGGGTTCCCTGGGAGGCTAAAGGAGAGTTTCAGGGCACTTCAAGGTACAAATTGGACAGAAATGGCAAAATTTATGAACACAAAGTTGATAACTTGGCATTCAATTTCCCACAGAATATTAAACCAGTTTCAGTTTTGGATTTGGTTACTGCATGCCCTGCAAGTCCAAACCCTACCTTTTTGTGGGGTCCTGTTGATGCATACTCTTCTTCATGGATAACCTTTTACAAGGCAATTAGGGAGACATTGGATCAAGAAAGGAGTTTGCTACCACAAGATGGTCTAGCTACATGTTCATAGCTATGTATGAGCTAGCACTTAATGTTTCATAGGTTATTATGTATACATTAGTGTTTAATAGGTCAGGTATAAATATAATGAATTTGATCCATAGCATAAAATGGTTTTTCTTCAAGGACAAGAGTGTATATAAGGCAGGGATGCAAAAATGTTCAAGTTGCACACTTTGTTGCTGGAGGAAATGGGGATTCCTATGTGTGGTAAGCTTATACAGATAACATATATCTATATCTAGTAATCTTATGAAATTAATTTTAATAGTTGTTGAACAAAATTGATTCTTGTCTTTTTTTTTTATTCTCTTATAATGGTTGAACCTTATTATGGATCACCCTTATTTAAAGGGGACATTCTATAATCTCTTCTAGACTTGT

Coding sequences of Glyma08g17540

Limit To All Plant Sequences

>Glyma08g17540.1   sequence type=CDS   gene model=Glyma08g17540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTTTCTTCTACCAAACGTCCAACCTTCTCTTTTAGCTCAATCCAAATCCAAGAAAGACAAAGCAAACCTTCACCAAACTCTCTCACCTCAAAAACCCACTTCTCAGTTTCCTATATCATCCACCACATGCTCTTCTTCTCTACAAACTTCCACTGCACAAGTTGCAAAAGTCAGCACACCACATGATAAGCAGCAACAACAGCCAAAGGATGAATTCTACCTCAACCTTGGTCTTGATGTCAGGACAATCCGTGAGGACCTTCCTTTGATCTTCATCAAAGACCTCAATTATGACATTTATAGGGATGACATAACATTCATGGACCCCTTGAACACATTTACTGGGATTGAGAAGTACAAGCTGATCTTCTGGGCATTGAGGTTTCATGGCAAAATCTTGTTCCGAGAGATTGCACTTGATGTGTACAGGGTGTGGCAGCCTTCAGAGAATGTGATATTGGTCAGGTGGAACCTTAGGGGTGTGCCGCGGGTTCCCTGGGAGGCTAAAGGAGAGTTTCAGGGCACTTCAAGGTACAAATTGGACAGAAATGGCAAAATTTATGAACACAAAGTTGATAACTTGGCATTCAATTTCCCACAGAATATTAAACCAGTTTCAGTTTTGGATTTGGTTACTGCATGCCCTGCAAGTCCAAACCCTACCTTTTTGTGGGGTCCTGTTGATGCATACTCTTCTTCATGGATAACCTTTTACAAGGCAATTAGGGAGACATTGGATCAAGAAAGGAGTTTGCTACCACAAGATGGTCTAGCTACATGTTCATAG

>Glyma08g17540.2   sequence type=CDS   gene model=Glyma08g17540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTTTCTTCTACCAAACGTCCAACCTTCTCTTTTAGCTCAATCCAAATCCAAGAAAGACAAAGCAAACCTTCACCAAACTCTCTCACCTCAAAAACCCACTTCTCAGTTTCCTATATCATCCACCACATGCTCTTCTTCTCTACAAACTTCCACTGCACAAGTTGCAAAAGTCAGCACACCACATGATAAGCAGCAACAACAGCCAAAGGATGAATTCTACCTCAACCTTGGTCTTGATGTCAGGACAATCCGTGAGGACCTTCCTTTGATCTTCATCAAAGACCTCAATTATGACATTTATAGGTTTTCATTGGAGTTTGGTTATTTCAGGGATGACATAACATTCATGGACCCCTTGAACACATTTACTGGGATTGAGAAGTACAAGCTGATCTTCTGGGCATTGAGGTTTCATGGCAAAATCTTGTTCCGAGAGATTGCACTTGATGTGTACAGGGTGTGGCAGCCTTCAGAGAATGTGATATTGGTCAGGTGGAACCTTAGGGGTGTGCCGCGGGTTCCCTGGGAGGCTAAAGGAGAGTTTCAGGGCACTTCAAGGTACAAATTGGACAGAAATGGCAAAATTTATGAACACAAAGTTGATAACTTGGCATTCAATTTCCCACAGAATATTAAACCAGTTTCAGTTTTGGATTTGGTTACTGCATGCCCTGCAAGTCCAAACCCTACCTTTTTGTGGGGTCCTGTTGATGCATACTCTTCTTCATGGATAACCTTTTACAAGGCAATTAGGGAGACATTGGATCAAGAAAGGAGTTTGCTACCACAAGATGGTCTAGCTACATGTTCATAG

Predicted protein sequences of Glyma08g17540

Limit To All Plant Sequences

>Glyma08g17540.1   sequence type=predicted peptide   gene model=Glyma08g17540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFLLPNVQPSLLAQSKSKKDKANLHQTLSPQKPTSQFPISSTTCSSSLQTSTAQVAKVSTPHDKQQQQPKDEFYLNLGLDVRTIREDLPLIFIKDLNYDIYRDDITFMDPLNTFTGIEKYKLIFWALRFHGKILFREIALDVYRVWQPSENVILVRWNLRGVPRVPWEAKGEFQGTSRYKLDRNGKIYEHKVDNLAFNFPQNIKPVSVLDLVTACPASPNPTFLWGPVDAYSSSWITFYKAIRETLDQERSLLPQDGLATCS*

>Glyma08g17540.2   sequence type=predicted peptide   gene model=Glyma08g17540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFLLPNVQPSLLAQSKSKKDKANLHQTLSPQKPTSQFPISSTTCSSSLQTSTAQVAKVSTPHDKQQQQPKDEFYLNLGLDVRTIREDLPLIFIKDLNYDIYRFSLEFGYFRDDITFMDPLNTFTGIEKYKLIFWALRFHGKILFREIALDVYRVWQPSENVILVRWNLRGVPRVPWEAKGEFQGTSRYKLDRNGKIYEHKVDNLAFNFPQNIKPVSVLDLVTACPASPNPTFLWGPVDAYSSSWITFYKAIRETLDQERSLLPQDGLATCS*

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