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Report for Sequence Feature Glyma08g17530

Feature Type:gene_model
Chromosome:Gm08
Start:13016616
stop:13019152
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G12750AT Annotation by Michelle Graham. TAIR10: zinc transporter 1 precursor | chr3:4051950-4053156 REVERSE LENGTH=355 SoyBaseE_val: 2.00E-151ISS
GO:0006826GO-bp Annotation by Michelle Graham. GO Biological Process: iron ion transport SoyBaseN/AISS
GO:0006829GO-bp Annotation by Michelle Graham. GO Biological Process: zinc ion transport SoyBaseN/AISS
GO:0006833GO-bp Annotation by Michelle Graham. GO Biological Process: water transport SoyBaseN/AISS
GO:0010043GO-bp Annotation by Michelle Graham. GO Biological Process: response to zinc ion SoyBaseN/AISS
GO:0010106GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion starvation SoyBaseN/AISS
GO:0030001GO-bp Annotation by Michelle Graham. GO Biological Process: metal ion transport SoyBaseN/AISS
GO:0055085GO-bp Annotation by Michelle Graham. GO Biological Process: transmembrane transport SoyBaseN/AISS
GO:0071577GO-bp Annotation by Michelle Graham. GO Biological Process: zinc ion transmembrane transport SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0005385GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion transmembrane transporter activity SoyBaseN/AISS
GO:0046873GO-mf Annotation by Michelle Graham. GO Molecular Function: metal ion transmembrane transporter activity SoyBaseN/AISS
KOG1558 KOG Fe2+/Zn2+ regulated transporter JGI ISS
PTHR11040Panther ZINC-IRON TRANSPORTER JGI ISS
PTHR11040:SF1Panther ZINC/IRON TRANSPORTER JGI ISS
PF02535PFAM ZIP Zinc transporter JGI ISS
UniRef100_I1KTX1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KTX1_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q6VM20UniRef Annotation by Michelle Graham. Most informative UniRef hit: Metal transport protein n=1 Tax=Medicago truncatula RepID=Q6VM20_MEDTR SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma15g41620 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g164400 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma08g17530.1   sequence type=CDS   gene model=Glyma08g17530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGAAATTTCAAGCATGTTCAAACCCCATCTCAAACTTGTTCTATGCGTGTTGTGTCCTTCTTTTACCACCAACCATGGCCTTAGGAGATTGCACCTGTGACACAAAAGAGGCCACAAAGAGTGACTCAATTGAAGTCCTCCACTACAAAATTGGCTCAATTGCTTCTGTGCTTGTTGCTGGGGCACTTGGGGTGAGCCTCCCATTGTTAAGCAAGAGAATCCCAACACTTAACCCCAAGAATGACATATTCTTTATGGTTAAGGCCTTTGCTGCAGGGGTGATTCTTGCAACTGGGTTTGTGCACATACTTCCTGAGGCATATGAGAGCCTAACTTCACCTTGCCTTAAGGAAAATCCTTGGGGCAAGTTTCCCTTCACTGGATTTGTTGCCATGTTGTCCTCCATAGGGACCTTAATGGTGGACTCATTTGCCACAGGGTTTTATCATAGGCAACATTTTAACCCCTCTAAGCAGGTTCCTGCTGATGATGAGGAAATGGGAGATGAACATGCTGGTCACATGCATGTTCATACACATGCCACACATGGTCATGCTCATGGATCAGCTGTGTCCCCTGAGGGTTCAATTACATCTGAAGTAATTAGGCAGCGCATCATATCACAAGTGTTGGAGATAGGTATAGTGGTCCATTCAGTGATCATTGGAATATCATTGGGTACTGCAGGGAGCATTGATACCATAAAGCCTCTTCTCGTGGCCCTGTCTTTCCATCAATTTTTTGAGGGTATGGGGCTTGGTGGTTGCATATCTCAGGCAAAGTTCGAGTCCAAGTCTACGGTAATTATGGCGACCTTTTTCTCCCTAACAACCCCAATTGGAATTGCAATTGGAATGGGGGTGTCAAGTGTGTACAAAGAGAATAGCCCTACTGCTTTAACTGTTGAAGGGATTTTCAATTCTGCTTCTGCTGGAATTTTGATTTACATGGCATTGGTGGATTTGTTAGCAGCTGATTTTATGAGCCCAAAGTTGCAGAAAAATTTGAAGCTCCAACTAGGGGCAAATATTTCCCTTCTCTTAGGTGCAGGTTGCATGTCTCTATTGGCCAAATGGGCCTAA

>Glyma08g17530.1   sequence type=predicted peptide   gene model=Glyma08g17530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMKFQACSNPISNLFYACCVLLLPPTMALGDCTCDTKEATKSDSIEVLHYKIGSIASVLVAGALGVSLPLLSKRIPTLNPKNDIFFMVKAFAAGVILATGFVHILPEAYESLTSPCLKENPWGKFPFTGFVAMLSSIGTLMVDSFATGFYHRQHFNPSKQVPADDEEMGDEHAGHMHVHTHATHGHAHGSAVSPEGSITSEVIRQRIISQVLEIGIVVHSVIIGISLGTAGSIDTIKPLLVALSFHQFFEGMGLGGCISQAKFESKSTVIMATFFSLTTPIGIAIGMGVSSVYKENSPTALTVEGIFNSASAGILIYMALVDLLAADFMSPKLQKNLKLQLGANISLLLGAGCMSLLAKWA*







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