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Report for Sequence Feature Glyma08g17511

Feature Type:gene_model
Chromosome:Gm08
Start:13006517
stop:13007702
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g17511
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G79480AT Annotation by Michelle Graham. TAIR10: Carbohydrate-binding X8 domain superfamily protein | chr1:29897905-29899267 REVERSE LENGTH=396 SoyBaseE_val: 7.00E-52ISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
PTHR16631Panther GLUCAN 1,3-BETA-GLUCOSIDASE-RELATED JGI ISS
PTHR16631:SF1Panther GLUCAN 1,3-BETA-GLUCOSIDASE JGI ISS
PF07983PFAM X8 domain JGI ISS
UniRef100_G7IB18UniRef Annotation by Michelle Graham. Most informative UniRef hit: Glucan endo-1,3-beta-glucosidase n=1 Tax=Medicago truncatula RepID=G7IB18_MEDTR SoyBaseE_val: 7.00E-56ISS
UniRef100_UPI0002338CE1UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002338CE1 related cluster n=1 Tax=unknown RepID=UPI0002338CE1 SoyBaseE_val: 3.00E-103ISS

Expression Patterns of Glyma08g17511
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g17511 not represented in the dataset
Glyma08g17511 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g17511
ParalogEvidenceComments
Glyma15g41630 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g17511 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g164200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g17511
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g17511
>Glyma08g17511.1   sequence type=CDS   gene model=Glyma08g17511   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCCCACCCTACTTTGAGCCCACCCCACCATTCATAATCCCTTCCCCCACGGGTGGCATCACCCCAGGCCCACCAAGCACTGTTCCATCCCCCACTGAAGGCACTGTCCCAAGCCCAAGTGTGTTTCAGCCACCTGTGGTGTACCCTCCACCGAGTGTGCCACCACCACCCAACTATGCCCCTAGGACCACCTTGTGGTGTGTGGCTAAGCCCTCAGTCCCAGACCCAATCATCCAAGAGGCCATGAACTATGCTTGCTGGTCAGGAGCAGACTGCACTTCAATTCAGCCCAATGGGCCGTGCTATGAGCCCAACACTGTGTATGCACATGCTTCATACGCTTTCAATAGTTATTGGCAAAGGACCAAAGGTGCTGGTGGCAATTGTGAATTTGGAGGCACAGCGATGCTGGTTGCAGTTGATCCTAGCTTTGATGGGTGCCACTTCATCTACAACTGA
Predicted protein sequences of Glyma08g17511
>Glyma08g17511.1   sequence type=predicted peptide   gene model=Glyma08g17511   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGPPYFEPTPPFIIPSPTGGITPGPPSTVPSPTEGTVPSPSVFQPPVVYPPPSVPPPPNYAPRTTLWCVAKPSVPDPIIQEAMNYACWSGADCTSIQPNGPCYEPNTVYAHASYAFNSYWQRTKGAGGNCEFGGTAMLVAVDPSFDGCHFIYN*






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