Glyma08g17460 - SoyBase

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Report for Sequence Feature Glyma08g17460

Feature Type:	gene_model
Chromosome:	Gm08
Start:	12968594
stop:	12973295
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g17460

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G54320	AT	Annotation by Michelle Graham. TAIR10: LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein \| chr1:20275732-20277793 REVERSE LENGTH=349	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009627	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance	SoyBase	N/A	ISS
GO:0009697	GO-bp	Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG2952	KOG	Cell cycle control protein	JGI		ISS
PTHR10926	Panther	CDC50-RELATED	JGI		ISS
PTHR10926:SF0	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF03381	PFAM	LEM3 (ligand-effect modulator 3) family / CDC50 family	JGI		ISS
UniRef100_D7KNX3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: LEM3 (Ligand-effect modulator 3) family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KNX3_ARALL	SoyBase	E_val: 0	ISS
UniRef100_I1KTW4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KTW4_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma08g17460

Locus	Gene Symbol	Protein Name
	LEM3	ligand-effect modulator 3

Expression Patterns of Glyma08g17460

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g17460

Paralog	Evidence	Comments
Glyma15g41680	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g17460 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g163800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g17460

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g17460

Limit To All Plant Sequences

>Glyma08g17460.2   sequence type=transcript   gene model=Glyma08g17460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTTTGTTTGACTCTCTTTGTTGTTGGCACCTTCCAATTCTTCTAATCTTCTGCGTTTATCTCTCTTTTCTTCTTCATTTCCGCAGCATAGAGAGAGATAGAAAGCGAAAGAAACCTAACACAATGGCGTCTTCGATCGCAGCTGGTGCTGGATCCACCGATCCCACAGCTGCCAGAAGAAACACTAAGCGACCCAAGTATTCAAAGTTTACTCAGCAAGAACTTCCAGCGTGTAAGCCAATTCTCACGCCACGAGCGGTTATTTCGGCATTCTTGCTTGTCAGCATTGTATTCGTTCCTATTGGAGTTGCTTCACTAATTGCTTCAAGGAAGGTTGTTGAAATTGTTTCTAGGTATGAATCAACATGCATACCAGATGGTGTTACTGACAAGGTAGCATACATTCAGAGTCCTGCAGATAAAACATGCCACATATCACTACCTGTGCACAAGCATATGAAGTCGCCTATTTATGTCTACTATCAACTTGACAACTTCTACCAAAATCATCGCCGATATGTTAAAAGCCGAAGTGATGAGCAATTGCGGGATCATAGGGAAGAGAACTCAACAAATGCTTGTAAGCCTGAAGATATAGCCAATGGAAAGGCAATTGTACCTTGTGGTCTTATAGCTTGGAGTTTATTCAATGACACATACAGTTTCTCCCGTGACAACAAGAATTTGACTGTGAACAAGAATGGCATCTCCTGGAAGAGTGATAGAGAGCACAAATTTGGAAAAGATGTTTTCCCCAAAAACTTCCAGAGTAGTGCTATTAGAGGTGGTGCAACTCTCAATGTATCCATACCATTGAGTAAGCAGGAGGATCTTATTGTCTGGATGCGAACTGCTGCTTTGCCAACTTTTAGGAAGTTGTATGGAAAGATAGAGGTGGATCTGAATGAAGGTGATAACATAACTGTGACACTGCAAAATAACTACAACACGTACAGTTTTAATGGCAAGAAAAAGCTTGTTCTGTCAACTACTAGCTGGCTTGGTGGGAAGAATGACTTCCTTGGCATTGCCTATCTCACTGTTGGAGGATTGTGCTTCTTTTTGGCATTGGCTTTTACCATTGTATATTTTGTCAAGCCAAGGTAAATACTTTAAATCCTTCATTGCTTTGTGGTTCAGACCATGAAAGTTCCTTTCACAGCACAGAAATTCATGGGGCACCTTGCATGGGCTTACTGCTTATTTATTTTTTATTTGTTTGACCAAAAATGGGGTTGGATGCATTTATTTGTTTTACACATTAGCACATGGAACTTGAATTTCTATTTGTGACTTGTTACCAGCAAAGTTGGCACACACACAGCGTGCCATCAGACCTAGACTAATTGGAGTATTAGGCCTGAGCATTTATTTCCTAACCCTTTCTTCTCCCTTTTTAACTCTGAAATCTGCATTGATTACATAGGCAATTTGATTAAAACCTAAATAATATTTGTGACTTGTATGTTCAGTGTGTTGTTAATTCTGTCTATTAGAAAATCTTGTCTGGTATGAGAGTTTTCTTCCTCCTGCATAGTAAAAATGATATTATTTCCTAATGGGACTACCAAGTTTGTTATAAAAAAAAAGAAGAGAAGCTCCCTTTAGTGTTATTCAAGGTATATAATTCAGATATTAATGATTAAAAAGCCATGTTTAGAACTTGTATAGGAAAAAAGGTTGAGGTTGTTTTAGATGCGATGACAAAATTGTTACACATGCTGCATGTTTTTGTTCAATGTCCATCGATTTCTTTGTTAGTGTCCACTGTACAATTTAAAATTCATATCTGTTCGATTGTGTAAATTAGTTTAGGATCTGTTTGTTCTAAGCTCTTTTTGAATTGAAATATATGTTTTAAAATTTATAATAATTATGATTTAAAAAAGAAGAAGCAAAAACCTCAAAAAAGAAAATTTGTTTTAATTCTTTACTCAGAAAAAAGGATAAAAAAAATCCTTTTCTCAGATGTCAAAAGTAGCAGGTTCTGGAGATAAAAAAAGCTAAAATAAGCAGTTTCATATAATCACCTTTTTTTAAAAGATTAAACAAATTGCCCCTTGTTGGATAATTAAAAT

>Glyma08g17460.3   sequence type=transcript   gene model=Glyma08g17460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGCGTAATTGCATTTGGTAGTTTTGTTTGACTCTCTTTGTTGTTGGCACCTTCCAATTCTTCTAATCTTCTGCGTTTATCTCTCTTTTCTTCTTCATTTCCGCAGCATAGAGAGAGATAGAAAGCGAAAGAAACCTAACACAATGGCGTCTTCGATCGCAGCTGGTGCTGGATCCACCGATCCCACAGCTGCCAGAAGAAACACTAAGCGACCCAAGTATTCAAAGTTTACTCAGCAAGAACTTCCAGCGTGTAAGCCAATTCTCACGCCACGAGCGGTTATTTCGGCATTCTTGCTTGTCAGCATTGTATTCGTTCCTATTGGAGTTGCTTCACTAATTGCTTCAAGGAAGGTTGTTGAAATTGTTTCTAGGTATGAATCAACATGCATACCAGATGGTGTTACTGACAAGGTAGCATACATTCAGAGTCCTGCAGATAAAACATGCCACATATCACTACCTGTGCACAAGCATATGAAGTCGCCTATTTATGTCTACTATCAACTTGACAACTTCTACCAAAATCATCGCCGATATGTTAAAAGCCGAAGTGATGAGCAATTGCGGGATCATAGGGAAGAGAACTCAACAAATGCTTGTAAGCCTGAAGATATAGCCAATGGAAAGGCAATTGTACCTTGTGGTCTTATAGCTTGGAGTTTATTCAATGACACATACAGTTTCTCCCGTGACAACAAGAATTTGACTGTGAACAAGAATGGCATCTCCTGGAAGAGTGATAGAGAGCACAAATTTGGAAAAGATGTTTTCCCCAAAAACTTCCAGAGTAGTGCTATTAGAGGTGGTGCAACTCTCAATGTATCCATACCATTGAGTAAGCAGGAGGATCTTATTGTCTGGATGCGAACTGCTGCTTTGCCAACTTTTAGGAAGTTGTATGGAAAGATAGAGGTGGATCTGAATGAAGGTGATAACATAACTGTGACACTGCAAAATAACTACAACACGTACAGTTTTAATGGCAAGAAAAAGCTTGTTCTGTCAACTACTAGCTGGCTTGGTGGGAAGAATGACTTCCTTGGCATTGCCTATCTCACTGTTGGAGGATTGTGCTTCTTTTTGGCATTGGCTTTTACCATTGTATATTTTGTCAAGCCAAGGCAACTTGGAGATCCCTCATATTTGTCATGGAATAGGAATCCAGGAGGGCGCTGAGCAAAGAAACTCACTATGCTCGTTGGTTATTTCCATGATTATAGGCCTTGGGTATTTTACAGATGTGGGTGTAGTTTTGTACATTAATGTTAACCCAATTACTAGTAGTACTTGTGAATTTAGGTGTTCTTATCCCTCCTCTCCCCAACACAAGAAAACCAAAACACTTTTTTTTCTTCTTTTTTTGTGTTATGCATCAGAATTAAAATATGTTGTATGTTCTGATAATATATAGTGTCCCAATATATGTTCTAGTTGCATTTCATACAACCTGGAGAAAATAGTTCTTTGGTTTTGGTTAGCTTTTGCTGAGCTAAAATAGGGGAAATGCCCCTTCAACGTTTGCATGTTCCCCTTCATGAAGTTGGTTTATTAGGAGAGGCTATATTTTAATTTTTTGGAGAAAAACAATTTATTCCATGAAAATTATCTTAAAACGGCCGGTGCTTTATCTCTACATCAATGC

Coding sequences of Glyma08g17460

Limit To All Plant Sequences

>Glyma08g17460.1   sequence type=CDS   gene model=Glyma08g17460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTCTTCGATCGCAGCTGGTGCTGGATCCACCGATCCCACAGCTGCCAGAAGAAACACTAAGCGACCCAAGTATTCAAAGTTTACTCAGCAAGAACTTCCAGCGTGTAAGCCAATTCTCACGCCACGAGCGGTTATTTCGGCATTCTTGCTTGTCAGCATTGTATTCGTTCCTATTGGAGTTGCTTCACTAATTGCTTCAAGGAAGGTTGTTGAAATTGTTTCTAGGTATGAATCAACATGCATACCAGATGGTGTTACTGACAAGGTAGCATACATTCAGAGTCCTGCAGATAAAACATGCCACATATCACTACCTGTGCACAAGCATATGAAGTCGCCTATTTATGTCTACTATCAACTTGACAACTTCTACCAAAATCATCGCCGATATGTTAAAAGCCGAAGTGATGAGCAATTGCGGGATCATAGGGAAGAGAACTCAACAAATGCTTGTAAGCCTGAAGATATAGCCAATGGAAAGGCAATTGTACCTTGTGGTCTTATAGCTTGGAGTTTATTCAATGACACATACAGTTTCTCCCGTGACAACAAGAATTTGACTGTGAACAAGAATGGCATCTCCTGGAAGAGTGATAGAGAGCACAAATTTGGAAAAGATGTTTTCCCCAAAAACTTCCAGAGTAGTGCTATTAGAGGTGGTGCAACTCTCAATGTATCCATACCATTGAGTAAGCAGGAGGATCTTATTGTCTGGATGCGAACTGCTGCTTTGCCAACTTTTAGGAAGTTGTATGGAAAGATAGAGGTGGATCTGAATGAAGGTGATAACATAACTGTGACACTGCAAAATAACTACAACACGTACAGTTTTAATGGCAAGAAAAAGCTTGTTCTGTCAACTACTAGCTGGCTTGGTGGGAAGAATGACTTCCTTGGCATTGCCTATCTCACTGTTGGAGGATTGTGCTTCTTTTTGGCATTGGCTTTTACCATTGTATATTTTGTCAAGCCAAGGCAACTTGGAGATCCCTCATATTTGTCATGGAATAGGAATCCAGGAGGGCGCTGA

>Glyma08g17460.2   sequence type=CDS   gene model=Glyma08g17460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTCTTCGATCGCAGCTGGTGCTGGATCCACCGATCCCACAGCTGCCAGAAGAAACACTAAGCGACCCAAGTATTCAAAGTTTACTCAGCAAGAACTTCCAGCGTGTAAGCCAATTCTCACGCCACGAGCGGTTATTTCGGCATTCTTGCTTGTCAGCATTGTATTCGTTCCTATTGGAGTTGCTTCACTAATTGCTTCAAGGAAGGTTGTTGAAATTGTTTCTAGGTATGAATCAACATGCATACCAGATGGTGTTACTGACAAGGTAGCATACATTCAGAGTCCTGCAGATAAAACATGCCACATATCACTACCTGTGCACAAGCATATGAAGTCGCCTATTTATGTCTACTATCAACTTGACAACTTCTACCAAAATCATCGCCGATATGTTAAAAGCCGAAGTGATGAGCAATTGCGGGATCATAGGGAAGAGAACTCAACAAATGCTTGTAAGCCTGAAGATATAGCCAATGGAAAGGCAATTGTACCTTGTGGTCTTATAGCTTGGAGTTTATTCAATGACACATACAGTTTCTCCCGTGACAACAAGAATTTGACTGTGAACAAGAATGGCATCTCCTGGAAGAGTGATAGAGAGCACAAATTTGGAAAAGATGTTTTCCCCAAAAACTTCCAGAGTAGTGCTATTAGAGGTGGTGCAACTCTCAATGTATCCATACCATTGAGTAAGCAGGAGGATCTTATTGTCTGGATGCGAACTGCTGCTTTGCCAACTTTTAGGAAGTTGTATGGAAAGATAGAGGTGGATCTGAATGAAGGTGATAACATAACTGTGACACTGCAAAATAACTACAACACGTACAGTTTTAATGGCAAGAAAAAGCTTGTTCTGTCAACTACTAGCTGGCTTGGTGGGAAGAATGACTTCCTTGGCATTGCCTATCTCACTGTTGGAGGATTGTGCTTCTTTTTGGCATTGGCTTTTACCATTGTATATTTTGTCAAGCCAAGGTAA

>Glyma08g17460.3   sequence type=CDS   gene model=Glyma08g17460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTCTTCGATCGCAGCTGGTGCTGGATCCACCGATCCCACAGCTGCCAGAAGAAACACTAAGCGACCCAAGTATTCAAAGTTTACTCAGCAAGAACTTCCAGCGTGTAAGCCAATTCTCACGCCACGAGCGGTTATTTCGGCATTCTTGCTTGTCAGCATTGTATTCGTTCCTATTGGAGTTGCTTCACTAATTGCTTCAAGGAAGGTTGTTGAAATTGTTTCTAGGTATGAATCAACATGCATACCAGATGGTGTTACTGACAAGGTAGCATACATTCAGAGTCCTGCAGATAAAACATGCCACATATCACTACCTGTGCACAAGCATATGAAGTCGCCTATTTATGTCTACTATCAACTTGACAACTTCTACCAAAATCATCGCCGATATGTTAAAAGCCGAAGTGATGAGCAATTGCGGGATCATAGGGAAGAGAACTCAACAAATGCTTGTAAGCCTGAAGATATAGCCAATGGAAAGGCAATTGTACCTTGTGGTCTTATAGCTTGGAGTTTATTCAATGACACATACAGTTTCTCCCGTGACAACAAGAATTTGACTGTGAACAAGAATGGCATCTCCTGGAAGAGTGATAGAGAGCACAAATTTGGAAAAGATGTTTTCCCCAAAAACTTCCAGAGTAGTGCTATTAGAGGTGGTGCAACTCTCAATGTATCCATACCATTGAGTAAGCAGGAGGATCTTATTGTCTGGATGCGAACTGCTGCTTTGCCAACTTTTAGGAAGTTGTATGGAAAGATAGAGGTGGATCTGAATGAAGGTGATAACATAACTGTGACACTGCAAAATAACTACAACACGTACAGTTTTAATGGCAAGAAAAAGCTTGTTCTGTCAACTACTAGCTGGCTTGGTGGGAAGAATGACTTCCTTGGCATTGCCTATCTCACTGTTGGAGGATTGTGCTTCTTTTTGGCATTGGCTTTTACCATTGTATATTTTGTCAAGCCAAGGCAACTTGGAGATCCCTCATATTTGTCATGGAATAGGAATCCAGGAGGGCGCTGA

Predicted protein sequences of Glyma08g17460

Limit To All Plant Sequences

>Glyma08g17460.1   sequence type=predicted peptide   gene model=Glyma08g17460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSIAAGAGSTDPTAARRNTKRPKYSKFTQQELPACKPILTPRAVISAFLLVSIVFVPIGVASLIASRKVVEIVSRYESTCIPDGVTDKVAYIQSPADKTCHISLPVHKHMKSPIYVYYQLDNFYQNHRRYVKSRSDEQLRDHREENSTNACKPEDIANGKAIVPCGLIAWSLFNDTYSFSRDNKNLTVNKNGISWKSDREHKFGKDVFPKNFQSSAIRGGATLNVSIPLSKQEDLIVWMRTAALPTFRKLYGKIEVDLNEGDNITVTLQNNYNTYSFNGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALAFTIVYFVKPRQLGDPSYLSWNRNPGGR*

>Glyma08g17460.2   sequence type=predicted peptide   gene model=Glyma08g17460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSIAAGAGSTDPTAARRNTKRPKYSKFTQQELPACKPILTPRAVISAFLLVSIVFVPIGVASLIASRKVVEIVSRYESTCIPDGVTDKVAYIQSPADKTCHISLPVHKHMKSPIYVYYQLDNFYQNHRRYVKSRSDEQLRDHREENSTNACKPEDIANGKAIVPCGLIAWSLFNDTYSFSRDNKNLTVNKNGISWKSDREHKFGKDVFPKNFQSSAIRGGATLNVSIPLSKQEDLIVWMRTAALPTFRKLYGKIEVDLNEGDNITVTLQNNYNTYSFNGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALAFTIVYFVKPR*

>Glyma08g17460.3   sequence type=predicted peptide   gene model=Glyma08g17460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSIAAGAGSTDPTAARRNTKRPKYSKFTQQELPACKPILTPRAVISAFLLVSIVFVPIGVASLIASRKVVEIVSRYESTCIPDGVTDKVAYIQSPADKTCHISLPVHKHMKSPIYVYYQLDNFYQNHRRYVKSRSDEQLRDHREENSTNACKPEDIANGKAIVPCGLIAWSLFNDTYSFSRDNKNLTVNKNGISWKSDREHKFGKDVFPKNFQSSAIRGGATLNVSIPLSKQEDLIVWMRTAALPTFRKLYGKIEVDLNEGDNITVTLQNNYNTYSFNGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALAFTIVYFVKPRQLGDPSYLSWNRNPGGR*

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