SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G79440 | AT | Annotation by Michelle Graham. TAIR10: aldehyde dehydrogenase 5F1 | chr1:29882525-29887275 REVERSE LENGTH=528 | SoyBase | E_val: 0 | ISS |
| GO:0006333 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin assembly or disassembly | SoyBase | N/A | ISS |
| GO:0006540 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glutamate decarboxylation to succinate | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009408 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to heat | SoyBase | N/A | ISS |
| GO:0009416 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to light stimulus | SoyBase | N/A | ISS |
| GO:0009450 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gamma-aminobutyric acid catabolic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0072593 | GO-bp | Annotation by Michelle Graham. GO Biological Process: reactive oxygen species metabolic process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005759 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial matrix | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0004028 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 3-chloroallyl aldehyde dehydrogenase activity | SoyBase | N/A | ISS |
| GO:0004777 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: succinate-semialdehyde dehydrogenase (NAD+) activity | SoyBase | N/A | ISS |
| GO:0005507 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: copper ion binding | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0016620 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | SoyBase | N/A | ISS |
| GO:0051287 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: NAD binding | SoyBase | N/A | ISS |
| KOG2451 | KOG | Aldehyde dehydrogenase | JGI | ISS | |
| PTHR11699 | Panther | ALDEHYDE DEHYDROGENASE-RELATED | JGI | ISS | |
| PTHR11699:SF49 | Panther | GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE | JGI | ISS | |
| PF00171 | PFAM | Aldehyde dehydrogenase family | JGI | ISS | |
| UniRef100_B1Q3F8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Succinic semialdehyde dehydrogenase n=1 Tax=Solanum lycopersicum RepID=B1Q3F8_SOLLC | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KTW3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KTW3_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g17450 not represented in the dataset |
Glyma08g17450 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g41690 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g163700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g17450.2 sequence type=transcript gene model=Glyma08g17450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACAACACTCAATTAAAACATTACTAATTACTAAATATTATTTTAGCCGATTCACTTCATCAAGCACAAGTAAACAAAACCACTGGAATTTTTCGACCACCATTGCAAATGGCCGCACTGAACCTTTGCCGCATGGCACTTCGATCCTCGAAACTTCTCTATCGCCCTTATAATCTTCTCTCCGTTCAGTTGCAGATGCAGATGCAACCCTCTTCTCCTCCCCTCACTCGAAAGATGAGCACGGATGCGCAGAGTATTGCTTCCCAGCTTAATAGTTCTGGATTGTTGAGGACTCAGGGCCTTATTGCAGGGAAATGGAGTGATGCTTATGATGGTAAAACCATAAAGGTTTATAATCCAGCAACTGGTGAATCTGTTGTAGATGTTGCATGCATGGGTGGAAGAGAGACAAACGATGCAATTTCTGCAGCCTATGATGCATATGGATCTTGGAGCAAAACCACTGCTGCTGAACGAAGCAAATTACTGAGGAAATGGTATGATTTGCTAATGGTACATAAAGAAGAACTTGCACAGCTTATAACCTTGGAGCAGGGGAAACCTCTTAAAGAGTCTGTGGGTGAGATAGTCTATGGGGCTGGCTTTATTGAGTTTGCAGCTGAGGAGGCAAAACGTATATATGGGGATATAGTTCCTGCACCTTTTTCTGATCGGCGATTATTTGTTCTAAAGCAGCCTGTAGGGGTTGTAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATGATTACTCGAAAGGTTGGTCCAGCCCTTGCATGTGGCTGTACAGTGGTCATAAAGCCCTCTGAACTTACACCTCTCACTGCTTTAGCTGCAGTGGAACTCTCCATTCAAGCTGGAATACCACCGGGTGTCGTGAACGTGGTAATGGGAAATGCTCCTGATATTGGGGACGCTTTACTTGCAAGTCCACAGGTAAGGAAGATCACATTCACAGGCTCGACAGCAGTTGGGAAGAAATTGATGGCTGGTTCAGCTGAAACAGTTAAAAAAGTATCTCTTGAACTCGGTGGCAATGCACCTTGCATAGTTTTTGATGATGCTGACCTGGATGTTGCAGTAAAAGGAACTCTTGCAGCAAAGTTCCGTAACAGTGGACAAACATGTGTTTGTGCAAATAGAATTATTGTGCAAGAAGGTATATATGAGAAGTTTGCAAATGCTTTACGTGATGCTGTTCAGAATATGAAAGTTGGGGATGGTTTTAGTGAAGGTGTGTCACAGGGTCCTCTAATAAATGAAGCTGCTGTAAAAAAGGTTGAGTCCTTAATTCATGATGCTACATCGAAGGGAGCAAAAGTAATTCTTGGGGGTAAAAGACATAGCCTTGGACTTACTTTTTATGAACCCACAGTCATCAGTGATGTCAACAGTGATATGCACATATCAAGTAACAGCTAAAGAGTAAACAAGTTTTGAAAAAGTGGAGACCAAACATCAGAGAGAGGATGTCAGGAGTTTGAATGGGAGAGTGGGGAGTTACAAATGAAGCAGCTGAAGGATAAATTTGGTAATAAAATGTGTAAACCAAAAAGGGCGTATTGCCTTTATAATTTTTATAGATTATAGATGAGGCTAATATCTACAAAATACAAACTGCGATTGAGTTTGGTAGAAACACAACTGTGCAGAACTGTTGAATCTTTTCACTGCACTGTCATTATATCTTCTGTAAAGCTAGTCTTCACCTCTCTTTGGTGATATGAGGATTCAAACCAATGTAGTTTATATAGTTTACAGTGCCTTGTTGCATGCTTCCTATATTCTATATGTGCAGAAATTTTGATATGGTTTATTTCACTTTGCCTTGATATCATCAAATGGAATTTTGTTGTTAACTTTC
>Glyma08g17450.1 sequence type=CDS gene model=Glyma08g17450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCGCACTGAACCTTTGCCGCATGGCACTTCGATCCTCGAAACTTCTCTATCGCCCTTATAATCTTCTCTCCGTTCAGTTGCAGATGCAGATGCAACCCTCTTCTCCTCCCCTCACTCGAAAGATGAGCACGGATGCGCAGAGTATTGCTTCCCAGCTTAATAGTTCTGGATTGTTGAGGACTCAGGGCCTTATTGCAGGGAAATGGAGTGATGCTTATGATGGTAAAACCATAAAGGTTTATAATCCAGCAACTGGTGAATCTGTTGTAGATGTTGCATGCATGGGTGGAAGAGAGACAAACGATGCAATTTCTGCAGCCTATGATGCATATGGATCTTGGAGCAAAACCACTGCTGCTGAACGAAGCAAATTACTGAGGAAATGGTATGATTTGCTAATGGTACATAAAGAAGAACTTGCACAGCTTATAACCTTGGAGCAGGGGAAACCTCTTAAAGAGTCTGTGGGTGAGATAGTCTATGGGGCTGGCTTTATTGAGTTTGCAGCTGAGGAGGCAAAACGTATATATGGGGATATAGTTCCTGCACCTTTTTCTGATCGGCGATTATTTGTTCTAAAGCAGCCTGTAGGGGTTGTAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATGATTACTCGAAAGGTTGGTCCAGCCCTTGCATGTGGCTGTACAGTGGTCATAAAGCCCTCTGAACTTACACCTCTCACTGCTTTAGCTGCAGTGGAACTCTCCATTCAAGCTGGAATACCACCGGGTGTCGTGAACGTGGTAATGGGAAATGCTCCTGATATTGGGGACGCTTTACTTGCAAGTCCACAGGTAAGGAAGATCACATTCACAGGCTCGACAGCAGTTGGGAAGAAATTGATGGCTGGTTCAGCTGAAACAGTTAAAAAAGTATCTCTTGAACTCGGTGGCAATGCACCTTGCATAGTTTTTGATGATGCTGACCTGGATGTTGCAGTAAAAGGAACTCTTGCAGCAAAGTTCCGTAACAGTGGACAAACATGTGTTTGTGCAAATAGAATTATTGTGCAAGAAGGTATATATGAGAAGTTTGCAAATGCTTTACGTGATGCTGTTCAGAATATGAAAGTTGGGGATGGTTTTAGTGAAGGTGTGTCACAGGGTCCTCTAATAAATGAAGCTGCTGTAAAAAAGGTTGAGTCCTTAATTCATGATGCTACATCGAAGGGAGCAAAAGTAATTCTTGGGGGTAAAAGACATAGCCTTGGACTTACTTTTTATGAACCCACAGTCATCAGTGATGTCAACAGTGATATGCACATATCAAGAGAGGAAGCATTTGGACCTGTTGCACCCCTTTTGAGATTCAAAACTGAAGAGGAAGCTATCAGAATTGCTAATGACACTAACGCAGGTTTGGGTTCATATGTATTTACAAACAGTATCCAACGATCATGGCGTGTTGCTGAGGCTCTTGAATATGGACTAGTGGGTGTTAATGAAGGAGTAATTTCAACTGAGGTGGCTCCATTTGGTGGTTTTAAACAGTCTGGCCTTGGAAGAGAAGGCTCCAAATATGGGATGGATGAATATTTAGAGATCAAGTATGTGTGCTTCGGAAACATGAACAAAGAATGA >Glyma08g17450.2 sequence type=CDS gene model=Glyma08g17450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCGCACTGAACCTTTGCCGCATGGCACTTCGATCCTCGAAACTTCTCTATCGCCCTTATAATCTTCTCTCCGTTCAGTTGCAGATGCAGATGCAACCCTCTTCTCCTCCCCTCACTCGAAAGATGAGCACGGATGCGCAGAGTATTGCTTCCCAGCTTAATAGTTCTGGATTGTTGAGGACTCAGGGCCTTATTGCAGGGAAATGGAGTGATGCTTATGATGGTAAAACCATAAAGGTTTATAATCCAGCAACTGGTGAATCTGTTGTAGATGTTGCATGCATGGGTGGAAGAGAGACAAACGATGCAATTTCTGCAGCCTATGATGCATATGGATCTTGGAGCAAAACCACTGCTGCTGAACGAAGCAAATTACTGAGGAAATGGTATGATTTGCTAATGGTACATAAAGAAGAACTTGCACAGCTTATAACCTTGGAGCAGGGGAAACCTCTTAAAGAGTCTGTGGGTGAGATAGTCTATGGGGCTGGCTTTATTGAGTTTGCAGCTGAGGAGGCAAAACGTATATATGGGGATATAGTTCCTGCACCTTTTTCTGATCGGCGATTATTTGTTCTAAAGCAGCCTGTAGGGGTTGTAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATGATTACTCGAAAGGTTGGTCCAGCCCTTGCATGTGGCTGTACAGTGGTCATAAAGCCCTCTGAACTTACACCTCTCACTGCTTTAGCTGCAGTGGAACTCTCCATTCAAGCTGGAATACCACCGGGTGTCGTGAACGTGGTAATGGGAAATGCTCCTGATATTGGGGACGCTTTACTTGCAAGTCCACAGGTAAGGAAGATCACATTCACAGGCTCGACAGCAGTTGGGAAGAAATTGATGGCTGGTTCAGCTGAAACAGTTAAAAAAGTATCTCTTGAACTCGGTGGCAATGCACCTTGCATAGTTTTTGATGATGCTGACCTGGATGTTGCAGTAAAAGGAACTCTTGCAGCAAAGTTCCGTAACAGTGGACAAACATGTGTTTGTGCAAATAGAATTATTGTGCAAGAAGGTATATATGAGAAGTTTGCAAATGCTTTACGTGATGCTGTTCAGAATATGAAAGTTGGGGATGGTTTTAGTGAAGGTGTGTCACAGGGTCCTCTAATAAATGAAGCTGCTGTAAAAAAGGTTGAGTCCTTAATTCATGATGCTACATCGAAGGGAGCAAAAGTAATTCTTGGGGGTAAAAGACATAGCCTTGGACTTACTTTTTATGAACCCACAGTCATCAGTGATGTCAACAGTGATATGCACATATCAAGTAACAGCTAA
>Glyma08g17450.1 sequence type=predicted peptide gene model=Glyma08g17450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAALNLCRMALRSSKLLYRPYNLLSVQLQMQMQPSSPPLTRKMSTDAQSIASQLNSSGLLRTQGLIAGKWSDAYDGKTIKVYNPATGESVVDVACMGGRETNDAISAAYDAYGSWSKTTAAERSKLLRKWYDLLMVHKEELAQLITLEQGKPLKESVGEIVYGAGFIEFAAEEAKRIYGDIVPAPFSDRRLFVLKQPVGVVGAITPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAVELSIQAGIPPGVVNVVMGNAPDIGDALLASPQVRKITFTGSTAVGKKLMAGSAETVKKVSLELGGNAPCIVFDDADLDVAVKGTLAAKFRNSGQTCVCANRIIVQEGIYEKFANALRDAVQNMKVGDGFSEGVSQGPLINEAAVKKVESLIHDATSKGAKVILGGKRHSLGLTFYEPTVISDVNSDMHISREEAFGPVAPLLRFKTEEEAIRIANDTNAGLGSYVFTNSIQRSWRVAEALEYGLVGVNEGVISTEVAPFGGFKQSGLGREGSKYGMDEYLEIKYVCFGNMNKE* >Glyma08g17450.2 sequence type=predicted peptide gene model=Glyma08g17450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAALNLCRMALRSSKLLYRPYNLLSVQLQMQMQPSSPPLTRKMSTDAQSIASQLNSSGLLRTQGLIAGKWSDAYDGKTIKVYNPATGESVVDVACMGGRETNDAISAAYDAYGSWSKTTAAERSKLLRKWYDLLMVHKEELAQLITLEQGKPLKESVGEIVYGAGFIEFAAEEAKRIYGDIVPAPFSDRRLFVLKQPVGVVGAITPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAVELSIQAGIPPGVVNVVMGNAPDIGDALLASPQVRKITFTGSTAVGKKLMAGSAETVKKVSLELGGNAPCIVFDDADLDVAVKGTLAAKFRNSGQTCVCANRIIVQEGIYEKFANALRDAVQNMKVGDGFSEGVSQGPLINEAAVKKVESLIHDATSKGAKVILGGKRHSLGLTFYEPTVISDVNSDMHISSNS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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