Glyma08g17390 - SoyBase

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Report for Sequence Feature Glyma08g17390

Feature Type:	gene_model
Chromosome:	Gm08
Start:	12904524
stop:	12908105
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g17390

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G79420	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF620) \| chr1:29871537-29874166 FORWARD LENGTH=417	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009855	GO-bp	Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry	SoyBase	N/A	ISS
GO:0009887	GO-bp	Annotation by Michelle Graham. GO Biological Process: organ morphogenesis	SoyBase	N/A	ISS
GO:0010014	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem initiation	SoyBase	N/A	ISS
GO:0010051	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylem and phloem pattern formation	SoyBase	N/A	ISS
GO:0010073	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem maintenance	SoyBase	N/A	ISS
GO:0048439	GO-bp	Annotation by Michelle Graham. GO Biological Process: flower morphogenesis	SoyBase	N/A	ISS
GO:0048519	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF04788	PFAM	Protein of unknown function (DUF620)	JGI		ISS
UniRef100_I1KTV9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KTV9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9SAK6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: T8K14.16 n=1 Tax=Arabidopsis thaliana RepID=Q9SAK6_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g17390

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g17390

Paralog	Evidence	Comments
Glyma15g41770	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g17390 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g163400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g17390

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g17390

Limit To All Plant Sequences

>Glyma08g17390.1   sequence type=CDS   gene model=Glyma08g17390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTCTAGAGCACGTTGGCGCCAGAGTTGGGCTCCACAGCCCTTGACACCCTTAATGGAAGGCCCTGGCCCTGAAATGCAAGAGGAAGGAACCAAGAAAGAGAGTTCATGGGAAGTAATAAGGGAATGGTTCAGGACTCAGAAGATCTCCCCAAGTGGAAGTTTTTCACAATCATCATCATCATTCTATGGAACCATTCATGCCAAGACACAAGATTTGAGGCTCTTGCTTGGTGTCTTGGGCTGTCCCTTGGCTCCTATTCCCTCAGCACATGATCCCACTCTTAGCATTCACATCAAAGACACCCCATTTGAAACTTCAACTGCCAAATACATTATCCAGCAGTATTTGGCAGCCACGGGGTGCCTAAAACAGCAAAAGGACACTAAAAACATGTATGCCACTGGGATGGTGAAGATGATTTGCTGTGAGACAGAGATTTCATCTGGGAAGAATGTCAAGTGCTTGGGTACAAGAAGCAGTGAAAATGGTTGCTTTGTGCTTTGGCAGATGCAACCTGGTATGTGGTCTCTTGAATTGGTGGTTGGTGACCACAAGGTGGTTGCAGGCAGCAATGGCAAAACCGTGTGGCGGCACACACCATGGCTTGGCACACATGCAGCCAAAGGCCCCCAAAGACCCCTTCGTCGCCTCATTCAGGGCTTGGATCCAAAGACCACAGCGAGTTTATTCACCAACGCGCAATGCTTGGGCGAGAATCGAATTGGGACCGTGGATTGCTTCGTGCTAAAGGTCTCGGCCGATCGTGCGGCAGTGGTTGAAAGGAGTGAGGGCCCCGCAGAGGTGATAAGGCACATTCTATACGGTTACTTTTGCCAAAAGAGTGGACTCCTCATATACCTAGAAGACTCTCACCTCACAAGGGTCCCAACACAAGACAATGATACGGTGTATTGGGAGACCACCATAGGGAGCAGCATCGGCGACTACCGGGACGTTGATGGCATCCTCATTGCACATCAAGGGCGGTCCGTCGCAACGGTGTTCCGGTTCGGGGAGCTCTCGATGCAGCATAGCCGGACCCGGATGGAGGAGATTTGGACCATTGATGATGTTATGTTTAATGTACCTGGACTCTCCATGGACCATTTCATTCCTCCAGCTGATATCTTTGACAATATAAATTCTCCATGA

Predicted protein sequences of Glyma08g17390

Limit To All Plant Sequences

>Glyma08g17390.1   sequence type=predicted peptide   gene model=Glyma08g17390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSRARWRQSWAPQPLTPLMEGPGPEMQEEGTKKESSWEVIREWFRTQKISPSGSFSQSSSSFYGTIHAKTQDLRLLLGVLGCPLAPIPSAHDPTLSIHIKDTPFETSTAKYIIQQYLAATGCLKQQKDTKNMYATGMVKMICCETEISSGKNVKCLGTRSSENGCFVLWQMQPGMWSLELVVGDHKVVAGSNGKTVWRHTPWLGTHAAKGPQRPLRRLIQGLDPKTTASLFTNAQCLGENRIGTVDCFVLKVSADRAAVVERSEGPAEVIRHILYGYFCQKSGLLIYLEDSHLTRVPTQDNDTVYWETTIGSSIGDYRDVDGILIAHQGRSVATVFRFGELSMQHSRTRMEEIWTIDDVMFNVPGLSMDHFIPPADIFDNINSP*

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