SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G79380 | AT | Annotation by Michelle Graham. TAIR10: Ca(2)-dependent phospholipid-binding protein (Copine) family | chr1:29860812-29863023 FORWARD LENGTH=401 | SoyBase | E_val: 0 | ISS |
| GO:0006487 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation | SoyBase | N/A | ISS |
| GO:0006816 | GO-bp | Annotation by Michelle Graham. GO Biological Process: calcium ion transport | SoyBase | N/A | ISS |
| GO:0009611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to wounding | SoyBase | N/A | ISS |
| GO:0009690 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinin metabolic process | SoyBase | N/A | ISS |
| GO:0009867 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0042742 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0004842 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG4172 | KOG | Predicted E3 ubiquitin ligase | JGI | ISS | |
| PTHR10857 | Panther | COPINE | JGI | ISS | |
| PTHR10857:SF11 | Panther | COPINE | JGI | ISS | |
| PF07002 | PFAM | Copine | JGI | ISS | |
| UniRef100_G7KJ99 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: E3 ubiquitin-protein ligase RGLG2 n=1 Tax=Medicago truncatula RepID=G7KJ99_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KTV7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KTV7_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma08g17330 not represented in the dataset |
Glyma08g17330 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g163000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g17330.1 sequence type=CDS gene model=Glyma08g17330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAAACCTCTTTGGCAAAAATAAAAAGCGTGACACTGAAAGTGCCAACAATAATAAAGGAAGAGGTGGAAGAATCTACACTGCCGTGACCACAAGAGGCTTACCACCTCATTTCCCAACACAATTACCTCATTCACAGCCTCCACCGCTATTATATCCAACTCTAGAACCTCCGCCACCGCCACCGCCGCCGCCGCCGCCACCGGCACTACCACAATCCATGTCCAAGAAACCAAGTTTTGCGAGAGTTTTCGCTAAACAAAGCTCTTCAGTCATGAACAACAATCAATCTGCTGCCAAGAAGTATGCTTTGATTCGTGATAACTTCTCTACCCTTGAACAGGTGACTACAGCCCTGAGGAAAGAAGGATTAGAATCATCAAATCTCATCCTTGGAATTGATTTTACAAAGAGCAATGAATGGACTGGCAGAATCTCATTCAATAAAAGAAGCCTGCATGCTATTGGAAGTACACCTAACCCTTACGAGAAGGCCATCTCTATTATTGGCAAGACATTGGCTCCCTTTGATGATGATAACTTGATTCCATGTTTTGGATTTGGTGATGCTACTACCCATGATCAAGAAGTGTTTAGCTTTCACAGTGATCATTCACCTTACCATGGCTTTGAGGAAGTTTTGGCCTGCTACCAGAAAATAGTTCCAAACTTGAAACTTTCAGGACCAACTTCTTATGCCCCGGTGATTGAGGCTGCTATAGACATTGTGGAGAAAAATCGTGGCCAATTCCATGTGTTGGTTATAGTTGCTGATGGCCAGGTTACAAGAAGTGTCGACACAAGTGATGGAGAACTCAGTCCTCAAGAAGAAAAAACAATTAAAGCAGTAGTTGATGCAAGCGCATATCCGCTTGCGATAGTTCTGGTTGGAGTTGGTGACGGGCCTTGGGAAGACATGAGAAAATTTGATGACAAGATACCAGCACGTGATTACGATAATTTTCAGTTTGTTAATTTCACGGAAATCATGTCCAAAAACATAAGCCCGTCGGAAAAAGAAGCAGCTTTTGCTCTGGCTGCTCTCATGGAGATCCCCTTCCAATATAAAGCAACCATGGAATTCGGAATACTCGGACGTGTAACAGGAAGAGCAAAGAGAATAGTTCCAAAACCTCCTCCTGTTCCTTATTCTAGGCCTGCACCCAGCATTAATACAGCAGCATCCTCCGGAGATGACCAAAACCAAACGGCCTGCCCAGTTTGTTTGACCAATGCAAGAGATTTGGCCTTTGGATGTGGGCACATGACTTGCAGAGAGTGTGGACACAAATTAACTAATTGTCCCATGTGCCGAGAGAGGATCACTAGTCGTCTCAGGGTGTACAGCGGGTGA
>Glyma08g17330.1 sequence type=predicted peptide gene model=Glyma08g17330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGNLFGKNKKRDTESANNNKGRGGRIYTAVTTRGLPPHFPTQLPHSQPPPLLYPTLEPPPPPPPPPPPPALPQSMSKKPSFARVFAKQSSSVMNNNQSAAKKYALIRDNFSTLEQVTTALRKEGLESSNLILGIDFTKSNEWTGRISFNKRSLHAIGSTPNPYEKAISIIGKTLAPFDDDNLIPCFGFGDATTHDQEVFSFHSDHSPYHGFEEVLACYQKIVPNLKLSGPTSYAPVIEAAIDIVEKNRGQFHVLVIVADGQVTRSVDTSDGELSPQEEKTIKAVVDASAYPLAIVLVGVGDGPWEDMRKFDDKIPARDYDNFQFVNFTEIMSKNISPSEKEAAFALAALMEIPFQYKATMEFGILGRVTGRAKRIVPKPPPVPYSRPAPSINTAASSGDDQNQTACPVCLTNARDLAFGCGHMTCRECGHKLTNCPMCRERITSRLRVYSG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
