Glyma08g17320 - SoyBase

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Report for Sequence Feature Glyma08g17320

Feature Type:	gene_model
Chromosome:	Gm08
Start:	12827538
stop:	12830723
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g17320

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G79330	AT	Annotation by Michelle Graham. TAIR10: metacaspase 5 \| chr1:29838722-29840137 FORWARD LENGTH=410	SoyBase	E_val: 1.00E-106	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0043068	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of programmed cell death	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0004197	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cysteine-type endopeptidase activity	SoyBase	N/A	ISS
KOG1546	KOG	Metacaspase involved in regulation of apoptosis	JGI		ISS
PF00656	PFAM	Caspase domain	JGI		ISS
UniRef100_G7IGU4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Metacaspase type II n=1 Tax=Medicago truncatula RepID=G7IGU4_MEDTR	SoyBase	E_val: 2.00E-126	ISS
UniRef100_I1KTV6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1KTV6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g17320

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g17320 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g162900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g17320

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g17320

Limit To All Plant Sequences

>Glyma08g17320.1   sequence type=CDS   gene model=Glyma08g17320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCACAAGTGCCTCATCAACATATATGGATTCTCAGAAAAAGACATAATTAACATCAGAGTGGCACTGTCCAAGCTGGTCCGGTCAGCCAAGCCCGGAGATGTTCTCTTTGTCCACTACAGCCGCCACGCCACGCGCCTCCCGCCGGAGATGGATGAGGAGGACAACACCGGCTATGATGAACGTACGGTGCCAAGGCTGGACAGACGAGGAGAGTTGTATTGTGTAATTCGCCAATCAAATGATGATTTCAGGCAATTTGTAGACAAGGTTCCAAGGGGTTGTAAAATCACAATCGTTTCAGATTGTTGCCATAGTGGTGGTCTAATAGAAGCAGCCAAGGAACAAATAGGAGATAGCACAAACGAAGAAGGCCAAAACTCACCCTCTCTATTTCACTTCAAAAACCTCTTCCATCGAAACATGGAACAAGAAGAAGAAGAAGAAACCATCGTGAAGAATCGTTCTTTGCCTCTTTCAACACTCACAGAAATACTCAAGCAAAAAAGTGGCAAGGATGATGACATAGAAATTGGGAAACTAAGACACACACTCTTTGGGGAAGATGCAAGCCCCAAAGTGAAGAAATATATGAATTTAGTCATAAACAAACTACAACATGGAACAAGTGGTGGCGAGAGAGGAGGAGGACACACAATTCTGGGGCTGGTGGGTGATCTTGCACAACAATTTTTCGAACAAAAGCTAAATGACGATGACAACCACGACGAGGAATATGCAAAACGTGGGTGGAGCAAGAGGGAGGAACATCATGCTGCATCAATCAAGCGCAACATTTTGGATTGTGGGATTCTGTTGAGTGGTTGCCAGAGTGACCAAACTTCTGCGGATTTCGCAAGTCCTTATGGAAATTCGGACGCGGCTTATGGGGCCTTCAGCAATGTGATTCAGAGCATAATTGAAGAGACTGATGGTGCAGTCACAAACAGGGAGCTTGTGCTGAAGGCTAGGATGGTGCTTAAGAGCCAGGGTTTTGATCAGAAGCCTGGACTGTATTGCAGTGACAACAATGTTAATGCTTCTTTTCTGTGTTGA

Predicted protein sequences of Glyma08g17320

Limit To All Plant Sequences

>Glyma08g17320.1   sequence type=predicted peptide   gene model=Glyma08g17320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHKCLINIYGFSEKDIINIRVALSKLVRSAKPGDVLFVHYSRHATRLPPEMDEEDNTGYDERTVPRLDRRGELYCVIRQSNDDFRQFVDKVPRGCKITIVSDCCHSGGLIEAAKEQIGDSTNEEGQNSPSLFHFKNLFHRNMEQEEEEETIVKNRSLPLSTLTEILKQKSGKDDDIEIGKLRHTLFGEDASPKVKKYMNLVINKLQHGTSGGERGGGHTILGLVGDLAQQFFEQKLNDDDNHDEEYAKRGWSKREEHHAASIKRNILDCGILLSGCQSDQTSADFASPYGNSDAAYGAFSNVIQSIIEETDGAVTNRELVLKARMVLKSQGFDQKPGLYCSDNNVNASFLC*

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