SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G10320 | AT | Annotation by Michelle Graham. TAIR10: Zinc finger C-x8-C-x5-C-x3-H type family protein | chr1:3384164-3388373 REVERSE LENGTH=757 | SoyBase | E_val: 8.00E-165 | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PTHR12620 | Panther | U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT | JGI | ISS | |
| PF00076 | PFAM | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | JGI | ISS | |
| PF00642 | PFAM | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | JGI | ISS | |
| UniRef100_Q9SY74 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger CCCH domain-containing protein 5 n=1 Tax=Arabidopsis thaliana RepID=C3H5_ARATH | SoyBase | E_val: 4.00E-162 | ISS |
| UniRef100_UPI0002338CD6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002338CD6 related cluster n=1 Tax=unknown RepID=UPI0002338CD6 | SoyBase | E_val: 0 | ISS |
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Glyma08g17310 not represented in the dataset |
Glyma08g17310 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g162800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g17310.2 sequence type=CDS gene model=Glyma08g17310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGCGGAAGCAGGCAAGGAAGGAGGAGGCTGAGAGGGAGCGGCGGGAGGAAGAGGAGCGCCTGAACAACCCCGAGGAGCAGAGGCGGATGCAGTTGCTGGAGCAGCAGGAGGCTGAGAGGATGCAGAGGGATATGATCCTCTTCCGAGAGAGAGAGAAGGCGTGGATGGACACTGTCATCACTCAAAAACAACAACAACAACAGCAGCAGCAACAAGAAGACGAGGATGATGAATACGAATATGTCGAGGAAGAAGGCCCTCCAGAGATCATTTGGCAAGGAAATGAGATCATCTTCAAGAAGAAACAACTCAGAGTTAGGGTTACCGACAGGGACAAACCAAAGCCCAACGAGACTAATCAAAATGACCACCAGCAGGAGGAGGATAATAAACCTACATCCAATCCCTTACCCCCGGAATCATTGACACTTGAGAATGTTGCTCAACAAATACCCAATTTTGGAACTGAACAGGATAAAGCTCATTGCCCTTTTCATCTAAAAACGGGAGCTTGTCGTTTTGGTATACGCTGTAGCAGAGTCCATTTTTACCCTGATAAGTCGTCCACTCTTCTTATCAAAAACATGTACAGTGGTCCTGGCCTTGCTTGCGACCAGGACCAGGATGAGGGCCTTGAGTATACAGATGAAGAGGTTGAACGCTGCTTTGAAGAATTTTATGAGGATGTTCACACAGAGTTCCTGAAGTTTGGGGAAATTGTGAACTTCAAGGTGTGTAAAAATGGTTCATTTCACTTGCGAGGAAATGTCTATGTACAGTATAAATCGCTTGATTCTGCTCTGCTTGCTTATAACACGGTGAATGGTCGCTACTTTGCTGGGAAACAGGTAAGTTGTCAATTTGTTAACTTGACACGATGGAAGGTTGCCATATGTGGCGAGTATATGAAATCAGGTTTCAAGACTTGTTCTCATGGAACAACATGCAATTTTATCCACTGTTTTCGTAATCCCGGCGGAGACTATGAATGGGCCGATTCTGACAAACCTCCCCCGAAATTTTGGGTAAAAAAAATGATCGCTTTATTTGGTTATTCTGATGATTATGAGACTTCAATGGAGCAAGGAAATATGAGTTTGTCAAAAACAGATTCTGACAGAACGTGCCACTCTAGAAGAAGGTCAAGATCTAGGGAGATGGATCAGTTAAATTGCGGTCATTCAGGTAGAAGAAAACAGCGAGATGAAAGAAAGCATAGAACTCCTAATGAGGATTGGAATGGCAGCTTTAAAAGGAAATCGAGAGGCAGAACTCCTGATTCCGGTGCTGTTTCTGACAGGGAATGGTTAGAAAAAGAGGAAAATAGGGAAACACACCATGAATACACTATGAATAGCAGACGCCATGAAGAAGATTCTGATGTGGAATGGGTTACTAGGGACAACGAAAAACAGCATGGTAGAGAAGGAAGAAACTCAAGAAAGCAAAACAGAGATGAGAAAAGGCACCATATTAGCAAAAGCAATTATCAGGGTGGCCGCGATGCTTCTGAATCTGAGAAAGATTTTCTTGGTAGAGGAGAGATGGAAACACAACATGATTATTACTCTAGGAAAAGCTCAAGATACAGAAGATCAGGTCTTGATGATGATGACTATAAATACCATGAGAATGAAAATGACAAAGTTGATGGCGGTTGGTCTCGGAAGGACAGTTACAAGCGAGAAGAGCATCATCACAAAAAGAAGAGATCAAAACATTAG
>Glyma08g17310.2 sequence type=predicted peptide gene model=Glyma08g17310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKRKQARKEEAERERREEEERLNNPEEQRRMQLLEQQEAERMQRDMILFREREKAWMDTVITQKQQQQQQQQQEDEDDEYEYVEEEGPPEIIWQGNEIIFKKKQLRVRVTDRDKPKPNETNQNDHQQEEDNKPTSNPLPPESLTLENVAQQIPNFGTEQDKAHCPFHLKTGACRFGIRCSRVHFYPDKSSTLLIKNMYSGPGLACDQDQDEGLEYTDEEVERCFEEFYEDVHTEFLKFGEIVNFKVCKNGSFHLRGNVYVQYKSLDSALLAYNTVNGRYFAGKQVSCQFVNLTRWKVAICGEYMKSGFKTCSHGTTCNFIHCFRNPGGDYEWADSDKPPPKFWVKKMIALFGYSDDYETSMEQGNMSLSKTDSDRTCHSRRRSRSREMDQLNCGHSGRRKQRDERKHRTPNEDWNGSFKRKSRGRTPDSGAVSDREWLEKEENRETHHEYTMNSRRHEEDSDVEWVTRDNEKQHGREGRNSRKQNRDEKRHHISKSNYQGGRDASESEKDFLGRGEMETQHDYYSRKSSRYRRSGLDDDDYKYHENENDKVDGGWSRKDSYKREEHHHKKKRSKH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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