SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G79270 | AT | Annotation by Michelle Graham. TAIR10: evolutionarily conserved C-terminal region 8 | chr1:29816157-29818811 FORWARD LENGTH=528 | SoyBase | E_val: 3.00E-131 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to wounding | SoyBase | N/A | ISS |
| GO:0009805 | GO-bp | Annotation by Michelle Graham. GO Biological Process: coumarin biosynthetic process | SoyBase | N/A | ISS |
| GO:0009963 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG1901 | KOG | Uncharacterized high-glucose-regulated protein | JGI | ISS | |
| PTHR12357 | Panther | YTH (YT521-B HOMOLOGY) DOMAIN-CONTAINING | JGI | ISS | |
| PTHR12357:SF6 | Panther | YTH DOMAIN-CONTAINING | JGI | ISS | |
| PF04146 | PFAM | YT521-B-like family | JGI | ISS | |
| UniRef100_G7IT77 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: YTH domain family protein n=2 Tax=Medicago truncatula RepID=G7IT77_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000189D6CD | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000189D6CD related cluster n=1 Tax=unknown RepID=UPI000189D6CD | SoyBase | E_val: 0 | ISS |
|
Glyma08g17240 not represented in the dataset |
Glyma08g17240 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g41960 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g162200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g17240.2 sequence type=transcript gene model=Glyma08g17240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CAATTTTCTTCATCTGCTTCTCTTTCTCTCTCTCGCTGTCTTTCTTAACTTTCTCTCTCTTCTGTGTTCTGTTCTGAGGACTCTCTCTCTTCCATTCATTCATCATTCAGCGTCTCTTTAAATAGGCTCTCTATTCAAAACCATATCTTCCAATCCAACCAAAAAAAGATTATCTTTTTTAAGGATATATCCACACCGTGCTTCTTGCCCTTCTCTCTCTCTTCCTCACACCCAAGAAGAAAAAAAAAGAAAATTTCTCTTTTTTTTGTGATTTTTTTATTTGTTTTGCACACCCTTCCTGAAATCTAGAGACAAGCCGCAAAATTAATCCATACCCAGAATTTCTCTCTCTGAAATATCTTGTGGGGTTTATCTGTTTTTTGTTGTTTTTGTTTGTACCCTTCGATTCTTCACCTTCATAGTTGAAGATATATACAAAGTATATATAATAGTATATAAAGCCGTGTTTGTTGGGTGTTTTGGAGGATCTGCTTTGTTTTGCTGTGTTCAGTGGATTGTGTTAAAGGGGTTTTGAAGATTTTTGTTGAAGTTGAAAAATCTGAGAGTTTTTTGGTTGAAGTTCTGCTCCCATGGCTGCTCAATTGCAAAAATCTGCAGATGAAATGAGGAAGAAGCTTCATGGTGATTCTTCAACGGTTGAACTCAATAATTCCAATTCGGTTCCTTCCAAGGGTGCAAGTTCCCCTTCTGATGCAAGATCATGTGTATCATCCATAGGGGATGCTTCTGGTAGTGTTAAGGAAGTTGATGTGGATCATGAGTACTTGTCCACAGATCAGGGCGTTCCTTATCCTGCCGGCGGCTATTACGGTTACTACTATCCAGGTTATGGTGGTTTCTATGGAGAGTCAGACAACCAAGGGTACTATGTTGGTGCCGATGCCGTGGATCTTCAGTACCCTGTCATGCAAGCAGATAATGGTTCTTATGTCTATCTCGTGCCAGGATTTCAGACTGGCTACCCTTCATACTATCATCCTCTAAGTCCAGCTGGTATTGAAGGACAGTATGTTGGCCATAACGTCTACCCCCCTGGCTCCATCTATCAACAACCGATTGGATCGCCTGGTTATTATCCAGCTTCTCTATCATATGGAGAGTTACAGCCAACAACATACTCGTGGGATTCACCTCTAATCAATCAAGATGGGTTACAAGGACATGGTTATAATGAACTGGCTGGTAAACCAAATGGTAGATCCAATTTGTCTTCCCAGAGTCATACTAGTGGTGTTGTGTCAAAGTCTGCACCCCCACCTAACTCGGCAGAAGGGAAGGGTTTGACATCATTATTAGAGGTCTCATCAACTCATGTTAAGCATAACCAGCCAAAACAAACAAACAAGGCACCAGTTTCGGTCCTCCATTCACCTGTTGCAAAGTTTCCCGCATACAATCAAGGAAAGAGCGGATTCCTCTATCCAAACAACTTGCTTAATGTGAAAGCAAACACAAAGGGCTGGGTTAGTACTGAAAAGTTGAAACAGAGAAACAAGGTCAACGATTCACTCAATGAGCAGAATCAAGGTCCTAGAACAGCTAATGCAAAAGGTGCATTAATGTCTGGAGGTAATTCTGTGAGAGGCTCAGCCCCAGGTGGGAGTGGAAATGTTACCAACAAAATCAGGACAGATCAGTACAACCTTCCTGATTTTCCAACCAAATATGATCATGCACTTTTCTTTGTCATCAAATCTTACAGTGAAGATGATATCCACAAGAGCATCAAGTACAACGTGTGGGCGAGTACTCCTAATGGGAATAAGAGGCTGGATGGTGCATTTCAGGATGCACAGAAGAGAATGGAAGAGAAAGGATGCAAGTGCCCTGTGTTCCTTTTCTTTTCGGTCAATGCTAGTGGTCAATTTTGCGGAGTAGCTGAGATGACTGGACGAGTTGATTTCAACAAAAGTATGGATTTCTGGCAACAGGATAAGTGGAATGGATATTTCTCTGTCAAATGGCACATTATAAAGGATGTTCCAAATCCTCAACTACGCCACATAATACTCGAGAATAATGATCACAAGCCTGTCACAAATAGTAGAGACACACAAGAGGTGAGTTTTCCCCAAGGTGTTGAAATGCTTAACATTTTCAAGAATTATGTGGCAAGAACTTCCATATTGGATGACTTTGAATTTTACGAAAGCCGCCAGAAGGTATTGCAGGAGAAGAAAACAAGGCAATCTATGCCCCATACCAGTGTACAGGTCTGCTTTACACTGCAACCTTATTCCAAGATTACTAAATATAGTTCTCATTGATTCCCACTTTTCCTTTTTGATATGATTGACAATGGGAACTCTTGATGTGCGCATTTGATTGTGGGACCTCATTGGCATAATTGTTCTTGGAGTAGGAATTCTTTTGCTATATCTGATCAATGCCTAGTTGATAAAAAAATTCTAAAGCTTTAGAGAATAATTTGGTGTTGGGAAATTTCATAACTAAGAGCTCTTTATAGACTTTGGAGCATTGCAATTTATTCTCTGTTCTTTATTTAATTTTATTGTGCAATCATATACCTTTGAGATGCTTTGCTCTCCTTGCTCATTGTTTTACTTAATTTTATTAATAAATAATATATGCACTACACTATCATCCAATCACAAACTGTCATGTATGATAAATAAGTTTGTTGACTTTTTTAGTAACTATCTTAAAAGTCATCAACGATGAGTTTTGATTAACACTTAACAGTATAAACTTTTACACTGACATGGCATGTCTATTAAACTCTTATTATATTGGTAGAATATAGATAAGTTTGTTAGACTTTTATAATAACTATGTTGAAAGTCATCCTAACGATATTTTTTAATTAGTTGATAGTATAAATTGTTTAACTTTGTCCATGCATACTTATTAAACTCTTGTTTTATTTTGCAGCAAATAGAGGAATTAACCACTACACTTGGGTCAGTAGACCTATCATCTGTGAAGAACATGGAGGATCCTAAGGTGGTTGAGAGAGTGAATGACTGAATAGCATGTGGGGCTGATGCTATTCCTGGGGACCCGCCATGCCAGCATGCCGATCACGATGGTGTGGCGATGTGCCACGTGGACCACAAAGTAAGAAAAAAAAAAGCTAATGAATTCAAATTTTAAGTTCTAAACCAAAAATTCTTGCTGCTGCTGATGCTTTAGAAAGGGAGAAAAGAAAAAGAAAAAGAAAAAATAATAATAATTTTTATCCGGGCAAATGGTGACTGCATTCCTAATTGTACAAAACTACAAAGGAAGAAAGTCTTTGGAAGTGGAATGGACCCGGTGAGATAGCTGTTACAGGGTGCTATGAAAAGCACGTGTCATTTACTTTTTTTTTTAATCTTTCTTTGCACATAATAAGCTCAGTTTGGTTCTTCCTTTGTTCTTGGTATTTTCAATTTTATTTTTCTTGTAGTTGCAGTTACCGATTTTAACAACATAACAAATGGCACGATTTGGACAGCTCATCAATAATAATATGTTGAGAATGATGGGTTCCATGTGGAAAATTATTGGAGTTGGGAACTCTCTGACCTTGCATTATTTCAATTTGAATATACTCCGCGCATTATTGCGTAATGAAATTGAGTGTTCATCCGTCTTTGGACTATTAAGAATTAAAAAGGCAAAATTGTAAAATTGATTCACCACTTTATCTTTAATTTCAGATTTGGTCCCCCTATAATTTAATTCACAAATTTGGTCCTTCAATTTTATAAATCCCTGCAAAATTGGTCTTGGAAGTCCAATT
>Glyma08g17240.1 sequence type=CDS gene model=Glyma08g17240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGCTCAATTGCAAAAATCTGCAGATGAAATGAGGAAGAAGCTTCATGGTGATTCTTCAACGGTTGAACTCAATAATTCCAATTCGGTTCCTTCCAAGGGTGCAAGTTCCCCTTCTGATGCAAGATCATGTGTATCATCCATAGGGGATGCTTCTGGTAGTGTTAAGGAAGTTGATGTGGATCATGAGTACTTGTCCACAGATCAGGGCGTTCCTTATCCTGCCGGCGGCTATTACGGTTACTACTATCCAGGTTATGGTGGTTTCTATGGAGAGTCAGACAACCAAGGGTACTATGTTGGTGCCGATGCCGTGGATCTTCAGTACCCTGTCATGCAAGCAGATAATGGTTCTTATGTCTATCTCGTGCCAGGATTTCAGACTGGCTACCCTTCATACTATCATCCTCTAAGTCCAGCTGGTATTGAAGGACAGTATGTTGGCCATAACGTCTACCCCCCTGGCTCCATCTATCAACAACCGATTGGATCGCCTGGTTATTATCCAGCTTCTCTATCATATGGAGAGTTACAGCCAACAACATACTCGTGGGATTCACCTCTAATCAATCAAGATGGGTTACAAGGACATGGTTATAATGAACTGGCTGGTAAACCAAATGGTAGATCCAATTTGTCTTCCCAGAGTCATACTAGTGGTGTTGTGTCAAAGTCTGCACCCCCACCTAACTCGGCAGAAGGGAAGGGTTTGACATCATTATTAGAGGTCTCATCAACTCATGTTAAGCATAACCAGCCAAAACAAACAAACAAGGCACCAGTTTCGGTCCTCCATTCACCTGTTGCAAAGTTTCCCGCATACAATCAAGGAAAGAGCGGATTCCTCTATCCAAACAACTTGCTTAATGTGAAAGCAAACACAAAGGGCTGGGTTAGTACTGAAAAGTTGAAACAGAGAAACAAGGTCAACGATTCACTCAATGAGCAGAATCAAGGTCCTAGAACAGCTAATGCAAAAGGTGCATTAATGTCTGGAGGTAATTCTGTGAGAGGCTCAGCCCCAGGTGGGAGTGGAAATGTTACCAACAAAATCAGGACAGATCAGTACAACCTTCCTGATTTTCCAACCAAATATGATCATGCACTTTTCTTTGTCATCAAATCTTACAGTGAAGATGATATCCACAAGAGCATCAAGTACAACGTGTGGGCGAGTACTCCTAATGGGAATAAGAGGCTGGATGGTGCATTTCAGGATGCACAGAAGAGAATGGAAGAGAAAGGATGCAAGTGCCCTGTGTTCCTTTTCTTTTCGGTCAATGCTAGTGGTCAATTTTGCGGAGTAGCTGAGATGACTGGACGAGTTGATTTCAACAAAAGTATGGATTTCTGGCAACAGGATAAGTGGAATGGATATTTCTCTGTCAAATGGCACATTATAAAGGATGTTCCAAATCCTCAACTACGCCACATAATACTCGAGAATAATGATCACAAGCCTGTCACAAATAGTAGAGACACACAAGAGGTGAGTTTTCCCCAAGGTGTTGAAATGCTTAACATTTTCAAGAATTATGTGGCAAGAACTTCCATATTGGATGACTTTGAATTTTACGAAAGCCGCCAGAAGGTATTGCAGGAGAAGAAAACAAGGCAATCTATGCCCCATACCAGTGTACAGCAAATAGAGGAATTAACCACTACACTTGGGTCAGTAGACCTATCATCTGTGAAGAACATGGAGGATCCTAAGGTGGTTGAGAGAGTGAATGACTGA >Glyma08g17240.2 sequence type=CDS gene model=Glyma08g17240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGCTCAATTGCAAAAATCTGCAGATGAAATGAGGAAGAAGCTTCATGGTGATTCTTCAACGGTTGAACTCAATAATTCCAATTCGGTTCCTTCCAAGGGTGCAAGTTCCCCTTCTGATGCAAGATCATGTGTATCATCCATAGGGGATGCTTCTGGTAGTGTTAAGGAAGTTGATGTGGATCATGAGTACTTGTCCACAGATCAGGGCGTTCCTTATCCTGCCGGCGGCTATTACGGTTACTACTATCCAGGTTATGGTGGTTTCTATGGAGAGTCAGACAACCAAGGGTACTATGTTGGTGCCGATGCCGTGGATCTTCAGTACCCTGTCATGCAAGCAGATAATGGTTCTTATGTCTATCTCGTGCCAGGATTTCAGACTGGCTACCCTTCATACTATCATCCTCTAAGTCCAGCTGGTATTGAAGGACAGTATGTTGGCCATAACGTCTACCCCCCTGGCTCCATCTATCAACAACCGATTGGATCGCCTGGTTATTATCCAGCTTCTCTATCATATGGAGAGTTACAGCCAACAACATACTCGTGGGATTCACCTCTAATCAATCAAGATGGGTTACAAGGACATGGTTATAATGAACTGGCTGGTAAACCAAATGGTAGATCCAATTTGTCTTCCCAGAGTCATACTAGTGGTGTTGTGTCAAAGTCTGCACCCCCACCTAACTCGGCAGAAGGGAAGGGTTTGACATCATTATTAGAGGTCTCATCAACTCATGTTAAGCATAACCAGCCAAAACAAACAAACAAGGCACCAGTTTCGGTCCTCCATTCACCTGTTGCAAAGTTTCCCGCATACAATCAAGGAAAGAGCGGATTCCTCTATCCAAACAACTTGCTTAATGTGAAAGCAAACACAAAGGGCTGGGTTAGTACTGAAAAGTTGAAACAGAGAAACAAGGTCAACGATTCACTCAATGAGCAGAATCAAGGTCCTAGAACAGCTAATGCAAAAGGTGCATTAATGTCTGGAGGTAATTCTGTGAGAGGCTCAGCCCCAGGTGGGAGTGGAAATGTTACCAACAAAATCAGGACAGATCAGTACAACCTTCCTGATTTTCCAACCAAATATGATCATGCACTTTTCTTTGTCATCAAATCTTACAGTGAAGATGATATCCACAAGAGCATCAAGTACAACGTGTGGGCGAGTACTCCTAATGGGAATAAGAGGCTGGATGGTGCATTTCAGGATGCACAGAAGAGAATGGAAGAGAAAGGATGCAAGTGCCCTGTGTTCCTTTTCTTTTCGGTCAATGCTAGTGGTCAATTTTGCGGAGTAGCTGAGATGACTGGACGAGTTGATTTCAACAAAAGTATGGATTTCTGGCAACAGGATAAGTGGAATGGATATTTCTCTGTCAAATGGCACATTATAAAGGATGTTCCAAATCCTCAACTACGCCACATAATACTCGAGAATAATGATCACAAGCCTGTCACAAATAGTAGAGACACACAAGAGGTGAGTTTTCCCCAAGGTGTTGAAATGCTTAACATTTTCAAGAATTATGTGGCAAGAACTTCCATATTGGATGACTTTGAATTTTACGAAAGCCGCCAGAAGGTATTGCAGGAGAAGAAAACAAGGCAATCTATGCCCCATACCAGTGTACAGGTCTGCTTTACACTGCAACCTTATTCCAAGATTACTAAATATAGTTCTCATTGA
>Glyma08g17240.1 sequence type=predicted peptide gene model=Glyma08g17240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAAQLQKSADEMRKKLHGDSSTVELNNSNSVPSKGASSPSDARSCVSSIGDASGSVKEVDVDHEYLSTDQGVPYPAGGYYGYYYPGYGGFYGESDNQGYYVGADAVDLQYPVMQADNGSYVYLVPGFQTGYPSYYHPLSPAGIEGQYVGHNVYPPGSIYQQPIGSPGYYPASLSYGELQPTTYSWDSPLINQDGLQGHGYNELAGKPNGRSNLSSQSHTSGVVSKSAPPPNSAEGKGLTSLLEVSSTHVKHNQPKQTNKAPVSVLHSPVAKFPAYNQGKSGFLYPNNLLNVKANTKGWVSTEKLKQRNKVNDSLNEQNQGPRTANAKGALMSGGNSVRGSAPGGSGNVTNKIRTDQYNLPDFPTKYDHALFFVIKSYSEDDIHKSIKYNVWASTPNGNKRLDGAFQDAQKRMEEKGCKCPVFLFFSVNASGQFCGVAEMTGRVDFNKSMDFWQQDKWNGYFSVKWHIIKDVPNPQLRHIILENNDHKPVTNSRDTQEVSFPQGVEMLNIFKNYVARTSILDDFEFYESRQKVLQEKKTRQSMPHTSVQQIEELTTTLGSVDLSSVKNMEDPKVVERVND* >Glyma08g17240.2 sequence type=predicted peptide gene model=Glyma08g17240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAAQLQKSADEMRKKLHGDSSTVELNNSNSVPSKGASSPSDARSCVSSIGDASGSVKEVDVDHEYLSTDQGVPYPAGGYYGYYYPGYGGFYGESDNQGYYVGADAVDLQYPVMQADNGSYVYLVPGFQTGYPSYYHPLSPAGIEGQYVGHNVYPPGSIYQQPIGSPGYYPASLSYGELQPTTYSWDSPLINQDGLQGHGYNELAGKPNGRSNLSSQSHTSGVVSKSAPPPNSAEGKGLTSLLEVSSTHVKHNQPKQTNKAPVSVLHSPVAKFPAYNQGKSGFLYPNNLLNVKANTKGWVSTEKLKQRNKVNDSLNEQNQGPRTANAKGALMSGGNSVRGSAPGGSGNVTNKIRTDQYNLPDFPTKYDHALFFVIKSYSEDDIHKSIKYNVWASTPNGNKRLDGAFQDAQKRMEEKGCKCPVFLFFSVNASGQFCGVAEMTGRVDFNKSMDFWQQDKWNGYFSVKWHIIKDVPNPQLRHIILENNDHKPVTNSRDTQEVSFPQGVEMLNIFKNYVARTSILDDFEFYESRQKVLQEKKTRQSMPHTSVQVCFTLQPYSKITKYSSH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
