SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G12770 | AT | Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:4351888-4353543 FORWARD LENGTH=551 | SoyBase | E_val: 0 | ISS |
| GO:0009663 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plasmodesma organization | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0010497 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plasmodesmata-mediated intercellular transport | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003724 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA helicase activity | SoyBase | N/A | ISS |
| GO:0004386 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: helicase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0008026 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity | SoyBase | N/A | ISS |
| KOG0327 | KOG | Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases | JGI | ISS | |
| PTHR24031 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24031:SF8 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00270 | PFAM | DEAD/DEAH box helicase | JGI | ISS | |
| PF00271 | PFAM | Helicase conserved C-terminal domain | JGI | ISS | |
| UniRef100_D5KXM9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Increased size exclusion limit 1a n=1 Tax=Nicotiana benthamiana RepID=D5KXM9_NICBE | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI00023383E4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023383E4 related cluster n=1 Tax=unknown RepID=UPI00023383E4 | SoyBase | E_val: 0 | ISS |
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Glyma08g17220 not represented in the dataset |
Glyma08g17220 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g41980 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g162000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g17220.1 sequence type=CDS gene model=Glyma08g17220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCAACTTTGATTACATCTAGGTTTCTTTTGCTTGTTGGAGAGTCACTCCACATGAGAAGGGGTTTGGCCACTTCTAGGTCTGTTTTATTGCACACTAGTAGTGTCCAGTGTATGAGCCAGGTGGAACCTCATCATGGTTCCGTCACCCTCTCTAGCATAGGTTTGCAAACTGAAACTGAACCTAGAAACAGAAGCAAAACAAATAAGGTTAAGCCATTGGGTTCACCCTCTGAGAATCTCAAGAGCAAAGGGAAGCCCTTCGGCATTAATGAGAAGAAAAAAACTTTTAGGGTTGTAGAGAAACAGCAAATAGAGTCTGCCCCTTTTGCTGCAAATTCATTTTCAGAACTTGGCCTCCCACTTGTGTTGATTGAGAGGCTAGAGAAGGAGGGTTTCACCGTTCCAACCGAAGTTCAGTCTGCTGCAGTTCCCACCATTCTCAACAACCGTGATGTCATAATTCAGTCTTACACGGGTTCGGGGAAGACGTTGGCTTATCTGCTTCCTATACTCTCGGTTGTTGGGCCACTGAGGGGGGAAATTGGTGAAGGTGACAGTGATGGCGGGGAGTGTGGGAAGAAGTTGGGAATTGAAGCAGTGATTGTTGCTCCTTCTAGGGAGCTTGGAATGCAGATAGTGAGGGAGTTTGAGAAGGTGCTAGGAATGGATAACAAGAGGGCGGTTCAGCAGCTTGTAGGGGGTGCAAACCGAACCAGGCAGGAAGATGCTCTCAAGAAAAATAAACCTGCAATTGTTGTTGGCACGCCTGGTAGGATAGCGGAGCTCAGTGCATCCGGGAAACTTCGAACTCACAGCTGTCGATTTTTGGTATTAGATGAAGTTGACGAACTCTTGTCGTTCAATTTCCGGGAAGACATGCACAGGATATTGGAGCATGTTGGGAGGAGATCAGGTGCAGACCAAAACTCAGATTCTAGAAAGGCCGAGCGACAGTTAATTATGGTTTCTGCAACTGTGCCATTTTCTGTTGTAAGGGCAGCTAGGAGCTGGGGTTGTGACCCACTTCTTGTCCAAGCTAAGAAAGTTGCCCCACTTGGAACTGTCTCTCCCTCTGAGCCTATCAGTTTGTCTCAGTCTTCACCCAGCTCAAGCCCTAGCTTGGCTATGCCATCTCCAGCAGCAGTAGAGAGTCTACCTCCTGCATTGAAACACTATTACTTTGTAACAAGGGTGCAGCACAAAGTTGATGTGTTGAGAAGGTGTATTCATGCACTGGATGCCAAATTTGTGATAGCCTTCATGAACCATACTAAGCAGCTAAAGGATGTTGTCTTCAAGCTGGAGGCCCGTGGGATGAAAGCCATGGAGTTACATGGGGATCTTGGGAAGCTTGCTAGGTCAACAACTCTGAAGAAATTCAAGAATGGTGAGGTGAGAGTTCTGGTGACAAATGAATTATCAGCAAGGGGTTTGGATGTGGCTGAATGTGATCTTGTGGTTAATCTAGACTTGCCGACAGATTCAATTCACTATGCACACCGAGCTGGCCGAACTGGTCGGCTTGGTAGGAATGGTACAGTGGTAACCATATGTGAAGAGTCAGAAGTGTTTGTTGTGAAGAAATTGCAGAAGCAGCTGGGAATACCAATTGCATCCTGTGATTTTGCAGAGGGGAAGCTACTTGTCAGTGAAGAAGAGAAAACAGTAAGCACTTCTGAAAGATGA
>Glyma08g17220.1 sequence type=predicted peptide gene model=Glyma08g17220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPTLITSRFLLLVGESLHMRRGLATSRSVLLHTSSVQCMSQVEPHHGSVTLSSIGLQTETEPRNRSKTNKVKPLGSPSENLKSKGKPFGINEKKKTFRVVEKQQIESAPFAANSFSELGLPLVLIERLEKEGFTVPTEVQSAAVPTILNNRDVIIQSYTGSGKTLAYLLPILSVVGPLRGEIGEGDSDGGECGKKLGIEAVIVAPSRELGMQIVREFEKVLGMDNKRAVQQLVGGANRTRQEDALKKNKPAIVVGTPGRIAELSASGKLRTHSCRFLVLDEVDELLSFNFREDMHRILEHVGRRSGADQNSDSRKAERQLIMVSATVPFSVVRAARSWGCDPLLVQAKKVAPLGTVSPSEPISLSQSSPSSSPSLAMPSPAAVESLPPALKHYYFVTRVQHKVDVLRRCIHALDAKFVIAFMNHTKQLKDVVFKLEARGMKAMELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRNGTVVTICEESEVFVVKKLQKQLGIPIASCDFAEGKLLVSEEEKTVSTSER*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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