Glyma08g17200 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g17200

Feature Type:	gene_model
Chromosome:	Gm08
Start:	12663097
stop:	12666911
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g17200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G05590	AT	Annotation by Michelle Graham. TAIR10: beta-hexosaminidase 2 \| chr1:1669871-1671686 FORWARD LENGTH=580	SoyBase	E_val: 0	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004553	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds	SoyBase	N/A	ISS
GO:0004563	GO-mf	Annotation by Michelle Graham. GO Molecular Function: beta-N-acetylhexosaminidase activity	SoyBase	N/A	ISS
GO:0015929	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hexosaminidase activity	SoyBase	N/A	ISS
GO:0035251	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UDP-glucosyltransferase activity	SoyBase	N/A	ISS
GO:0043169	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cation binding	SoyBase	N/A	ISS
KOG2499	KOG	Beta-N-acetylhexosaminidase	JGI		ISS
PTHR22600	Panther	BETA-HEXOSAMINIDASE	JGI		ISS
PF00728	PFAM	Glycosyl hydrolase family 20, catalytic domain	JGI		ISS
PF02838	PFAM	Glycosyl hydrolase family 20, domain 2	JGI		ISS
UniRef100_G7IQQ5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Beta-hexosaminidase subunit beta n=1 Tax=Medicago truncatula RepID=G7IQQ5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KTU6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KTU6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g17200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g17200

Paralog	Evidence	Comments
Glyma15g41986	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g17200 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g161900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g17200

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g17200

Limit To All Plant Sequences

>Glyma08g17200.1   sequence type=CDS   gene model=Glyma08g17200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTCGTACCAACACCATTACTATGACAAAACTAGAACCAACACTCTTTTTACTACTACTTTTCATGTTGTCATGCCTAATAACAGTGAACAATGCACACTCAACAACAATCATCAACGTGTGGCCAAAACCAAGAAACCTCACGTGGGCCCCACCATACCAAGCCACCCTCATTGCCTCCACATTCACCATCATCACCACCACAACTCCCCACCACAACAAACACCTCTCCGCCGCCATCATCCGCTACCAAAACCTCGTAAAATCCGAGCACCACCACCCACTTGTCCCCCCAGGGGTGAACATCTCCACAAACCTCCCACCACTGAATTCCCTCACCCTCACTGTCCTTGATCCCGGTGCAGGACTCGTCCACGACGTGGACGAGTCCTACACCCTCTCCATCCCCCCTTCTTCCTCCTCAGCCACCCTCACTGCAAAGACCACGTGGGGAGCCATGCGAGGCCTGGAGACGTTCTCCCAGCTCGCATGGGGCAACCCCACGTGCGTTGCAGTGGGGGTCCACTTGTGGGATTCCCCGCTCTACGCCCACCGTGGCATCATGCTTGACACTTCAAGGAACTATTTTCCAGTGAAGGACTTGTTGAGGACAGTGGAAGCCATGAGCATGAACAAGCTCAACGTGTTCCACTGGCACGTCACGGACTCGCAGTCTTTCCCATTGGTCCTTCCTTCGGAGCCTGCTTTGGCTGAAAAGGGTGCTTATGCCTCTCACATGGTGTACTCACCAGAGGATGTGAAAAGGGTTGTGGAGTTTGGTCTTGATCATGGGGTTCGTGTTATGCCTGAGATTGACTCACCTGGGCACACTGGATCTTGGGCTTTAGCCTACCCTGAAATTGTAGCTTGTGCCAACATGTTCTGGTGGCCAGCAGAAGGTGACATTCTTGCTGCAGAACCAGGAACAGGTCATTTGAACCCTCTAAACCCCAAGACTTACCAAGTCCTAAAGAACGTAATTCGTGACATGACAACGTTGTTTCCAGAACCATTTTACCACTCAGGTGCTGATGAGATTGTACCAGGTTGCTGGAAAACTGATCCCACAATTCAGAAGTATCTGTCAAATGGTGGAACTCTCAGCCAAGTTCTTGAGAAGTTCATCAACAACACTCTCCCTTTCATAGTGTCCCTCAACCGAACCGTCGTCTATTGGGAAGATGTTTTGCTAAGTGAAACAGTCCATGTGCCATCCACAATTCTTCCCAAGGAGCATGTGGTTTTGCAGACATGGAACAATGGACACAACAACACCAAAAGGATTGTTTCCTCGGGGTATCGCACCATTGTGTCGTCATCAGACTTCTACTATCTGGATTGTGGCCATGGTGACTTTGTAGGGAATAATAGTATCTATGATCAGCAAAATGGGGATAACAAAGACAACGGTGGCTCTTGGTGTGGACCTTTCAAGACATGGCAAACCATATACAATTATGACATAGCATATGGGTTGAGTGAGGAAGAAGCAAAGTTGGTTTTGGGTGGGGAAGTGGCACTTTGGACAGAACAAGCTGATTCTACTGTTTTGGATGGAAGAATTTGGCCAAGAACTTCTGCGTTGGCTGAGTCATTATGGTCAGGAAATAGGGATGAAAAGGGTATGAAGAGATATGCAGAGGCCACAGATAGATTGAATGAATGGAGAAGCAGAATGGTAAGTAGAGGAATAGGTGCTGAGCCTATTCAGCCACTTTGGTGTGTTAGAAACCCTGGCATGTGCAACACAGTTCAATAA

Predicted protein sequences of Glyma08g17200

Limit To All Plant Sequences

>Glyma08g17200.1   sequence type=predicted peptide   gene model=Glyma08g17200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPRTNTITMTKLEPTLFLLLLFMLSCLITVNNAHSTTIINVWPKPRNLTWAPPYQATLIASTFTIITTTTPHHNKHLSAAIIRYQNLVKSEHHHPLVPPGVNISTNLPPLNSLTLTVLDPGAGLVHDVDESYTLSIPPSSSSATLTAKTTWGAMRGLETFSQLAWGNPTCVAVGVHLWDSPLYAHRGIMLDTSRNYFPVKDLLRTVEAMSMNKLNVFHWHVTDSQSFPLVLPSEPALAEKGAYASHMVYSPEDVKRVVEFGLDHGVRVMPEIDSPGHTGSWALAYPEIVACANMFWWPAEGDILAAEPGTGHLNPLNPKTYQVLKNVIRDMTTLFPEPFYHSGADEIVPGCWKTDPTIQKYLSNGGTLSQVLEKFINNTLPFIVSLNRTVVYWEDVLLSETVHVPSTILPKEHVVLQTWNNGHNNTKRIVSSGYRTIVSSSDFYYLDCGHGDFVGNNSIYDQQNGDNKDNGGSWCGPFKTWQTIYNYDIAYGLSEEEAKLVLGGEVALWTEQADSTVLDGRIWPRTSALAESLWSGNRDEKGMKRYAEATDRLNEWRSRMVSRGIGAEPIQPLWCVRNPGMCNTVQ*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain