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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G54350 | AT | Annotation by Michelle Graham. TAIR10: ABC transporter family protein | chr1:20286917-20290245 FORWARD LENGTH=706 | SoyBase | E_val: 0 | ISS |
| GO:0000023 | GO-bp | Annotation by Michelle Graham. GO Biological Process: maltose metabolic process | SoyBase | N/A | ISS |
| GO:0006810 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transport | SoyBase | N/A | ISS |
| GO:0019252 | GO-bp | Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process | SoyBase | N/A | ISS |
| GO:0019761 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process | SoyBase | N/A | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016887 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATPase activity | SoyBase | N/A | ISS |
| GO:0017111 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity | SoyBase | N/A | ISS |
| GO:0042626 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of substances | SoyBase | N/A | ISS |
| KOG0060 | KOG | Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) | JGI | ISS | |
| PTHR11384 | Panther | ATP-BINDING CASSETTE TRANSPORTER-RELATED | JGI | ISS | |
| PTHR11384:SF18 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00005 | PFAM | ABC transporter | JGI | ISS | |
| PF06472 | PFAM | ABC transporter transmembrane region 2 | JGI | ISS | |
| UniRef100_A2Q3K0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: AAA ATPase; ABC transporter, transmembrane region, type 1 n=1 Tax=Medicago truncatula RepID=A2Q3K0_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KTT6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KTT6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g17110 not represented in the dataset |
Glyma08g17110 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g160900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g17110.2 sequence type=CDS gene model=Glyma08g17110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATCTTGCTGACTCAACAAGTGCACCCACTTCTCACCTTTTCCTCTACCTATAAGTCTAATTCTCCATTGCACCCCCATGTTCAACTCAAGGTTGGGGTTGGTGTGGTTACCCCATTTTCCCAAGTGCCCATTATGCCCTTTTGCAAAGGAAGGCCTTACAGGAGGAGGAGGAAGGGGAGCAGGTGTTCCTCTTCTGCTGCAGCACAGGCTCCGTTGCCACCTGACCCAGATAAGGGTGAGAGTCCTGATCTGCAGACTCTTTTCAGAAGGTTCTGGAAGGTGGCAGCTCCTTACTGGACTTCAGATGACAAGGGACCGGCAAGGTTGCAGCTTGCTGGTGTTTTTGCTCTCACTTTGGCCACCACTGGAATCAGTGTTGGCTTCAATTTCTTGGGGAGAGACTTCTTCAATTCACTTGCTAACAAGGATCAAGAGCAATTCACGAAGCAACTACTTTACTACTTGGTTTTATGCTTGCTGTTCTGCATTGTTTTTGGTGTGTCATGCTCATATCCTTATTCCAACCTTCTGCACATGTTTCTTACCCTGTTCATCATTGCATTGCAGATTTTTGTGTTGAGAGATTATGCAAGAGAAACTCTTTCTTTGAGATGGAGATCTTGGATGACAAGATATTACATTGATCGCTATCTGAAGAATCAAACTTTCTATAAAATTCAGTCACAATCAATCATTGATAATCCAGACCAACGAATTGTTGATGATCTAAGTTCTTTCACTGGGACATCCCTTGCTTTCTCCCTGACTCTCTTTAATGCTGCTGTAGACTTAATCTCATTTAGTAATATCTTGTATGGGATCTATCCTCCACTCTTTGTTGTTCTTATCGTATACTCGATTGGTGGGACAGCTATCAGTGTTTTCCTTGGAAGAGGACTGGTGAATTTAAATTTCTTGCAAGAGAAAAAGGAAGCAGACTTTCGTTATGGACTTGTGCGGGTTCGGGAAAATGCTGAATCAATTGCTTTCTACAGTGGTGAAGAAAGTGAAATGCAACTTCTTCTGCAGCGCTTTAAAAGTGCTTTTGAAAATCTGACTCAATTGTTGATTGCTTCCAGAAATCTGGATTTCTTCACCAGTGGCTACCGCTATCTAATTCAAGTTCTTCCTGCTGCTGTTGTTGCCCCCCTGTATTTCTCAGGAAAAATCGAGTTTGGTGTAATCAATCAGTCACTTTCTGCTTTTAATCATATCCTTGGCGACTTTTCCCTCATTGTGTACCAGTTTCAAGCTATAAGTGCTTTTTCTGCTGTTATTAATCGGTTAGGTGAATTTGATGATGTTTTGGACAGAAGTAGCTCTAATTCTCTCACTGATACTGTGGAAGACATACAAATTACATACAAAGATTTTAGTAGTTCATCTGCATTGGAATCTAATGGATCCACTCCACCAGAAAAATACGCGACATTACTGGAGATAGAAGATTTGATTTTGAAAACACCAAGTGAATCTACACTTATTAGAGACTTGTCATTGACGATCAAGGAAAAGGATAGTTTACTGGTAATGGGACCAAGTGGAAGTGGCAAGACTTCTTTGTTAAGAGCTATGGCTGGTCTATGGAAAACTGGAACTGGAAAGATCACATACTATGTAAAAGGTGGAGAATATCCTGAGCAATCCATTTGTTCAGATGTGAATACTCCAGTAAATAATGCTAATGACACATATGAAGCACGTGGAAAATGCTTAAGCAGAAAATCTGGAATTTTTTTCCTTCCGCAAAGACCGTATATGGTTTTGGGTACCCTTCGTGAACAATTAATGTATCCAACTTGGACAGATGACGTAGTTCCTATGTCAGACAGTACTAAAGAAAAAAATGCACTTCCTTTCTTGACAAACTTGCCAAACTTGGATAATGCAAATGATAAGCCTATGAAGCCAACAACAGACGAGCTGATAAAGGTCTTAGAGGATGTCCGCCTTGGATATTTATTGGCTCGTTTCAGTTTGGATTCAATACATGAATGGTCTAGTGTTCTTTCTCTGGGAGAGCAGCAACGCCTTGCATTTGCTCGTCTTTTGCTTTCAAAGCCTCAATTGGCTTTACTGGATGAGTCTACAAGTGCACTTGATGAAGTCAATGAGGTACATTTGTACCAAAAGATTGGAGCAGCTAACATAACATATGTCAGCATTGGCCATCGGTCATCCTTATGTGCTTACCACGACAAGATCTTAAGCATATCCACATTTAATTCTGACAGTGAACAGCTAAATTGGTGCATTGAACCCATTGAACCCACTAGACCCGAGTCCTCTTTAAAATTTACAAATCTTTGA
>Glyma08g17110.2 sequence type=predicted peptide gene model=Glyma08g17110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MILLTQQVHPLLTFSSTYKSNSPLHPHVQLKVGVGVVTPFSQVPIMPFCKGRPYRRRRKGSRCSSSAAAQAPLPPDPDKGESPDLQTLFRRFWKVAAPYWTSDDKGPARLQLAGVFALTLATTGISVGFNFLGRDFFNSLANKDQEQFTKQLLYYLVLCLLFCIVFGVSCSYPYSNLLHMFLTLFIIALQIFVLRDYARETLSLRWRSWMTRYYIDRYLKNQTFYKIQSQSIIDNPDQRIVDDLSSFTGTSLAFSLTLFNAAVDLISFSNILYGIYPPLFVVLIVYSIGGTAISVFLGRGLVNLNFLQEKKEADFRYGLVRVRENAESIAFYSGEESEMQLLLQRFKSAFENLTQLLIASRNLDFFTSGYRYLIQVLPAAVVAPLYFSGKIEFGVINQSLSAFNHILGDFSLIVYQFQAISAFSAVINRLGEFDDVLDRSSSNSLTDTVEDIQITYKDFSSSSALESNGSTPPEKYATLLEIEDLILKTPSESTLIRDLSLTIKEKDSLLVMGPSGSGKTSLLRAMAGLWKTGTGKITYYVKGGEYPEQSICSDVNTPVNNANDTYEARGKCLSRKSGIFFLPQRPYMVLGTLREQLMYPTWTDDVVPMSDSTKEKNALPFLTNLPNLDNANDKPMKPTTDELIKVLEDVRLGYLLARFSLDSIHEWSSVLSLGEQQRLAFARLLLSKPQLALLDESTSALDEVNEVHLYQKIGAANITYVSIGHRSSLCAYHDKILSISTFNSDSEQLNWCIEPIEPTRPESSLKFTNL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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