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Report for Sequence Feature Glyma08g17091

Feature Type:gene_model
Chromosome:Gm08
Start:12521916
stop:12526092
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g17091
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G12685AT Annotation by Michelle Graham. TAIR10: Acid phosphatase/vanadium-dependent haloperoxidase-related protein | chr3:4029245-4030261 REVERSE LENGTH=213 SoyBaseE_val: 9.00E-67ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF02681PFAM Divergent PAP2 family JGI ISS
UniRef100_G7IT34UniRef Annotation by Michelle Graham. Most informative UniRef hit: Membrane protein, putative n=1 Tax=Medicago truncatula RepID=G7IT34_MEDTR SoyBaseE_val: 1.00E-121ISS
UniRef100_UPI0002338B68UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002338B68 related cluster n=1 Tax=unknown RepID=UPI0002338B68 SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g17091
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g17091 not represented in the dataset
Glyma08g17091 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g17091 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g160700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g17091
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g17091
>Glyma08g17091.1   sequence type=CDS   gene model=Glyma08g17091   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGCTGCAACATTCTATGTTCTGTGCCATTCCTCCCTCTCACTTCACCCCACCACTCAAACAAAGGAACCCATCTCTTCACCGTCTTCCTTCTCCTAGAAAGCCCAAAGCCTCCACCCTAAGAATTTCCTCTCTTGGCGCTGGTTTCTTCGATGACATCGTCCAAATTGCTCATAACAAGGTTCTGATTGCAGCTGGTGTCTCTGTGGCGATTGGTCAGCTTTCTAAGCCATTCACTTCTGTTTTTCTGTATGGCAAAGGGTTTGATATCAGAGCAGTTGTTCAAGCTGGAGGGTTCCCTTCATCACACTCTTCTGCAACAGTGGCTAGTGCAACATTATTTGGCCTTGAGAGAGGCTTCTCCGATCCTATTTTTGGTCTTGCAGTTGTGTATGCCGGTCTCATTATGTATGATGCTCAGGGTGTAAGAAGAGAAGTAGGGATTCATGCCAAGACATTGAACAAAATACTGCTCCAAATGCAAGCCAACTCTTTACATTCCAAAGATAGAGATAATTTGATTAACTCTCAACCAGGACTATCAAAACCTCTAAAAGTTGGTCTTGATAAGTCCCTTTTGTCCCAAGAAGCCACTTCTTTGGAACCACAAGAAACAAATAGAGGTCTATTGGTTAAATCAGGAAGCAAAATAAGGCAAACAGATGCAGATGAAATCTCATCAAAGTTGGCCATTGATGGTATACCCCAACTAAAAGAATCTATTGGTCATACAGAGATTGAAGTCATAGCTGGTGCTTTACTAGGCTTTTTGGTGGCTTTGGCTGTGTATAATTTCAAGTAA
Predicted protein sequences of Glyma08g17091
>Glyma08g17091.1   sequence type=predicted peptide   gene model=Glyma08g17091   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLLQHSMFCAIPPSHFTPPLKQRNPSLHRLPSPRKPKASTLRISSLGAGFFDDIVQIAHNKVLIAAGVSVAIGQLSKPFTSVFLYGKGFDIRAVVQAGGFPSSHSSATVASATLFGLERGFSDPIFGLAVVYAGLIMYDAQGVRREVGIHAKTLNKILLQMQANSLHSKDRDNLINSQPGLSKPLKVGLDKSLLSQEATSLEPQETNRGLLVKSGSKIRQTDADEISSKLAIDGIPQLKESIGHTEIEVIAGALLGFLVALAVYNFK*






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