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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G04770 | AT | Annotation by Michelle Graham. TAIR10: 40s ribosomal protein SA B | chr3:1309544-1310846 REVERSE LENGTH=280 | SoyBase | E_val: 9.00E-148 | ISS |
| GO:0000028 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ribosomal small subunit assembly | SoyBase | N/A | ISS |
| GO:0000447 | GO-bp | Annotation by Michelle Graham. GO Biological Process: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | SoyBase | N/A | ISS |
| GO:0000461 | GO-bp | Annotation by Michelle Graham. GO Biological Process: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | SoyBase | N/A | ISS |
| GO:0006407 | GO-bp | Annotation by Michelle Graham. GO Biological Process: rRNA export from nucleus | SoyBase | N/A | ISS |
| GO:0006412 | GO-bp | Annotation by Michelle Graham. GO Biological Process: translation | SoyBase | N/A | ISS |
| GO:0006606 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0022626 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome | SoyBase | N/A | ISS |
| GO:0022627 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosolic small ribosomal subunit | SoyBase | N/A | ISS |
| GO:0030686 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: 90S preribosome | SoyBase | N/A | ISS |
| GO:0003735 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome | SoyBase | N/A | ISS |
| KOG0830 | KOG | 40S ribosomal protein SA (P40)/Laminin receptor 1 | JGI | ISS | |
| PTHR11489 | Panther | RIBOSOMAL PROTEIN S2, EUKARYOTIC AND ARCHAEAL FORM | JGI | ISS | |
| PTHR11489:SF7 | Panther | 40S RIBOSOMAL PROTEIN SA | JGI | ISS | |
| PF00318 | PFAM | Ribosomal protein S2 | JGI | ISS | |
| UniRef100_I1KTS5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KTS5_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_O65751 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 40S ribosomal protein SA n=1 Tax=Cicer arietinum RepID=RSSA_CICAR | SoyBase | E_val: 5.00E-172 | ISS |
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Glyma08g17000 not represented in the dataset |
Glyma08g17000 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g42150 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g159800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g17000.2 sequence type=transcript gene model=Glyma08g17000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TATTTTTTCTTCCAAACTTACCCTTCTCGCTGGCCTTCTCTTTTCCTTCAAAAAACTCCACTATCATCCCAATTTCTTCCTACTTATCTTCTTCACCACGTTCGGCCTTTCTTTTTTCACCTCCTTCCCAATCCAATCCAATCCGAGGCAGTGTTCTCTCTACCAGCATGCGGTTTTTCCAGAGCGTGAGGTGAGGGAGTCGTGGAGGTTACCGTTGTGCATGAGATGATAGACGAGGAGGAAACGGCGTCGTTTGGGGTCGAACCTAAAGGGAGGCCGAGTCCATGAGCTTGACGGCGACGGGATCGCCGGCCGTCGTGGCGCGGCGGCGGAGGGGGTCGTTCGTTCACGCTTGCGGAGTAGTGTGCGCGTGTCGAAAAACGAGAAGAGAGTGGGCAACTGGTTGTAAAGAGAGGGGTATTTACATAATTAACCTTGGAAAGACATGGGAGAAGCTTCAGCTTGCTGCTAGGATTATAGTCGCCATTGAGAACCCACAGGATATCATCGTTCAGTCCGCCAGGCCTTATGGCCAGAGGGCAGTTCTAAAGTTTGCTCAATACACTGGAGCTCATGCAATTGCAGGAAGGCACACTCCCGGAACATTCACTAATCAGATGCAGCAATCCTACAATGAGCCTCGTCTTCTGATTCTAACTGATCCAAGAACAGATCATCAGCCTATCAAGGAAGGTGCTCTTGGAAATATTCCAACTATTGCTTTTTGTGACACTGATTCTCCAATGCGGTATGTTGATGTCGGGATCCCTGCCAATAATAAGGGGAAGCATAGCATTGGTTGTCTCTTTTGGCTATTAGCAAGGATGGTACTGCAGATGCGGGGCACTATTCGTCCAGGGCACAAGTGGGATGTAATGGTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAAGATGAAGCACCACCTGCCCAAGATTATGCCATTTCAGACTTCAATGCTGCTGGCATTGGCAGCTTCCCTGCTACTGATGGCCAATGGCCTGCTGCAGTCGAACAACCCTGGACTGAAGAAGCTCCACAACCAATCTCAGCAGCTCCTACTAACTGGACACCAGAAGCAGCTGCTGCAGGAGATTGGGGTGAGGCTGTTCCAGCTCCTGCTCCAGCTCCAGTTCCACAAGCTGGTGCGCCTCCAGCTCAAGCTTTTCCTCCTGCTACTGGCTGGGACTAGCTTTTGACAAGAGATTTTATTCCATGGTGTCAAAACCATAGTTTTTCTTCCCCTCGGCTCAGAAACTTCCCTTCCAAGATTTTATTTGTTAGAAAAGAAACATCATTTACTTGATATTGAATCTCAGTAAAATTTTGTTTGTTGACATATTGAAGGAAACTTCATCGTTTAAAATTTAAATGTAGTAATTTAATTGTTTCATAAATAGGTTTTTATACCGTTTGCTAGAAGTGTTGCATTCTATTCCACATGCTAATGAGTTAAGTTCTATAATAATTGCTCTTCGAAGAGTGAAAAATGGCTGGCTTAAAATTTGAGGCAGGGTATAAGCTTATAAGATTAAAAT
>Glyma08g17000.1 sequence type=CDS gene model=Glyma08g17000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCGCCACCGACTCCTCCGCTGCTTCGTCACGCCAGCTTTCGCAGAGGGAGACGGACATCCAGATGATGCTCGCCGCCGACGTTCACCTCGGCACCAAAAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCCGCACCGATGGTATTTACATAATTAACCTTGGAAAGACATGGGAGAAGCTTCAGCTTGCTGCTAGGATTATAGTCGCCATTGAGAACCCACAGGATATCATCGTTCAGTCCGCCAGGCCTTATGGCCAGAGGGCAGTTCTAAAGTTTGCTCAATACACTGGAGCTCATGCAATTGCAGGAAGGCACACTCCCGGAACATTCACTAATCAGATGCAGCAATCCTACAATGAGCCTCGTCTTCTGATTCTAACTGATCCAAGAACAGATCATCAGCCTATCAAGGAAGGTGCTCTTGGAAATATTCCAACTATTGCTTTTTGTGACACTGATTCTCCAATGCGGTATGTTGATGTCGGGATCCCTGCCAATAATAAGGGGAAGCATAGCATTGGTTGTCTCTTTTGGCTATTAGCAAGGATGGTACTGCAGATGCGGGGCACTATTCGTCCAGGGCACAAGTGGGATGTAATGGTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAAGATGAAGCACCACCTGCCCAAGATTATGCCATTTCAGACTTCAATGCTGCTGGCATTGGCAGCTTCCCTGCTACTGATGGCCAATGGCCTGCTGCAGTCGAACAACCCTGGACTGAAGAAGCTCCACAACCAATCTCAGCAGCTCCTACTAACTGGACACCAGAAGCAGCTGCTGCAGGAGATTGGGGTGAGGCTGTTCCAGCTCCTGCTCCAGCTCCAGTTCCACAAGCTGGTGCGCCTCCAGCTCAAGCTTTTCCTCCTGCTACTGGCTGGGACTAG >Glyma08g17000.2 sequence type=CDS gene model=Glyma08g17000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGCTTGACGGCGACGGGATCGCCGGCCGTCGTGGCGCGGCGGCGGAGGGGGTCGTTCGTTCACGCTTGCGGAGTAGTGTGCGCGTGTCGAAAAACGAGAAGAGAGTGGGCAACTGGTTGTAAAGAGAGGGGTATTTACATAATTAACCTTGGAAAGACATGGGAGAAGCTTCAGCTTGCTGCTAGGATTATAGTCGCCATTGAGAACCCACAGGATATCATCGTTCAGTCCGCCAGGCCTTATGGCCAGAGGGCAGTTCTAAAGTTTGCTCAATACACTGGAGCTCATGCAATTGCAGGAAGGCACACTCCCGGAACATTCACTAATCAGATGCAGCAATCCTACAATGAGCCTCGTCTTCTGATTCTAACTGATCCAAGAACAGATCATCAGCCTATCAAGGAAGGTGCTCTTGGAAATATTCCAACTATTGCTTTTTGTGACACTGATTCTCCAATGCGGTATGTTGATGTCGGGATCCCTGCCAATAATAAGGGGAAGCATAGCATTGGTTGTCTCTTTTGGCTATTAGCAAGGATGGTACTGCAGATGCGGGGCACTATTCGTCCAGGGCACAAGTGGGATGTAATGGTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAAGATGAAGCACCACCTGCCCAAGATTATGCCATTTCAGACTTCAATGCTGCTGGCATTGGCAGCTTCCCTGCTACTGATGGCCAATGGCCTGCTGCAGTCGAACAACCCTGGACTGAAGAAGCTCCACAACCAATCTCAGCAGCTCCTACTAACTGGACACCAGAAGCAGCTGCTGCAGGAGATTGGGGTGAGGCTGTTCCAGCTCCTGCTCCAGCTCCAGTTCCACAAGCTGGTGCGCCTCCAGCTCAAGCTTTTCCTCCTGCTACTGGCTGGGACTAG
>Glyma08g17000.1 sequence type=predicted peptide gene model=Glyma08g17000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAATDSSAASSRQLSQRETDIQMMLAADVHLGTKNCDFQMERYVFKRRTDGIYIINLGKTWEKLQLAARIIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQMQQSYNEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDVGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEEAKQQEEDEAPPAQDYAISDFNAAGIGSFPATDGQWPAAVEQPWTEEAPQPISAAPTNWTPEAAAAGDWGEAVPAPAPAPVPQAGAPPAQAFPPATGWD* >Glyma08g17000.2 sequence type=predicted peptide gene model=Glyma08g17000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSLTATGSPAVVARRRRGSFVHACGVVCACRKTRREWATGCKERGIYIINLGKTWEKLQLAARIIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQMQQSYNEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDVGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEEAKQQEEDEAPPAQDYAISDFNAAGIGSFPATDGQWPAAVEQPWTEEAPQPISAAPTNWTPEAAAAGDWGEAVPAPAPAPVPQAGAPPAQAFPPATGWD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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