Glyma08g16980 - SoyBase

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Report for Sequence Feature Glyma08g16980

Feature Type:	gene_model
Chromosome:	Gm08
Start:	12460105
stop:	12470071
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g16980

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G22130	AT	Annotation by Michelle Graham. TAIR10: mannosyltransferase family protein \| chr5:7337486-7339831 REVERSE LENGTH=450	SoyBase	E_val: 0	ISS
GO:0006506	GO-bp	Annotation by Michelle Graham. GO Biological Process: GPI anchor biosynthetic process	SoyBase	N/A	ISS
GO:0009790	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development	SoyBase	N/A	ISS
GO:0009832	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis	SoyBase	N/A	ISS
GO:0030244	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process	SoyBase	N/A	ISS
GO:0051301	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell division	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005789	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0000030	GO-mf	Annotation by Michelle Graham. GO Molecular Function: mannosyltransferase activity	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
GO:0016758	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups	SoyBase	N/A	ISS
GO:0051751	GO-mf	Annotation by Michelle Graham. GO Molecular Function: alpha-1,4-mannosyltransferase activity	SoyBase	N/A	ISS
KOG3893	KOG	Mannosyltransferase	JGI		ISS
PTHR12886	Panther	PIG-M MANNOSYLTRANSFERASE	JGI		ISS
PF05007	PFAM	Mannosyltransferase (PIG-M)	JGI		ISS
UniRef100_G7LHL5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: GPI mannosyltransferase n=1 Tax=Medicago truncatula RepID=G7LHL5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KTS4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KTS4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g16980

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g16980 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g159600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g16980

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g16980

Limit To All Plant Sequences

>Glyma08g16980.1   sequence type=CDS   gene model=Glyma08g16980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCCTTAGATATTCATTCACTGCTTTTATTCTCTGCCATTTTCCGTGTTATTTTGATTGTGTATGGAGAGTGGCAAGATGCTCATATGGAGGTTAGATACACTGATGTTGACTACCTTGTCTTTTCTGATGCTGCTGCTTTAATGGCTGTGGGCGATTCCCCTTATAAGAGAACCACTTATCGCTATTCTCCTTTGCTTGCCTTTCTTCTCATTCCAAATTCGTTCATCCATCGCTCCTGGGGAAAGTTTCTTTTCTCGGCTTCAGATCTACTTGTGGGATATTTCATCTATTATATTTTAAAGCTACGGAAGGTTCCTGAAAATTTGTGCAACTATTCTGTCATGACTTGGCTCTTTAATCCATTTACCTTCACCATTGGGACACGTGGGAACTGTGAACCTATTGTTTGTGCTGTGGTATTGTGGATTATTATTTGTCTTATGAAAGGTAATGTGTTACAGTCAGCATTTTGGTATGGACTTGTTGTCCATTTCAGGATTTATCCTATAATTTACTCTATTCCTATAATCCTGGTTCTTGATCCGAACTTCTTCCCATCTAATCAGAAACCTGTCCTAAGGAACTGGAGTGCTGTTCAGGGAGAGAGACCCAAAGATGGTTGTGGCCAGCATACTTTACACAATCTATTTAAAAACATATTCACAAGGAACAGACTGATATTTGGACTGGTCTCTGGATTGGTTTTCCTCTTTTGTACTGGTCTTTTCTTCTGTTTATATGAGTGGGAATTCCTACACGAGGCGCTGTTGTACCATCTTACTCGAACAGATCCAAGGCATAACTTCTCCATCTATTTCTATCACATATATCTCCATTATGGGCAGGATACTTCAGTCGTGGAAAAGCTTATCTCCTTTTTGCCCCAATTTTTTGTTCAGCTGGTTCTTATCTTCTGCTTTGCACAAGATTTGACATTTTGCCTATTTGTGCAGACTGTGGCCTTTGTGGCATTCAATAAGGTGATTACAGCACAGTATTTCGTTTGGTTCTTTTGCTTGTTGCCTCTAATACTTCCTTGGAGTAAAATGAAACTTAGATGGGATGGATTATCTTGCATTCTTGTGTGGATTGGGGCTCAGACCCATTGGTTGATGTGGGGCTACCTGCTTGAGTTCAAGGGTAAAAATGTCTTCTTACAGCTTTGGGCGGCAGGCTTACTGTTTCTAGCAGCCAACATATTTATCCTCGTCATGATTATTCGTCACCATAAATATGCTTCAGTTTTCAAAGCTTTAGAATATGCTAACTCCAAGAATGCAGCTAAGCTTGAATGA

Predicted protein sequences of Glyma08g16980

Limit To All Plant Sequences

>Glyma08g16980.1   sequence type=predicted peptide   gene model=Glyma08g16980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASLDIHSLLLFSAIFRVILIVYGEWQDAHMEVRYTDVDYLVFSDAAALMAVGDSPYKRTTYRYSPLLAFLLIPNSFIHRSWGKFLFSASDLLVGYFIYYILKLRKVPENLCNYSVMTWLFNPFTFTIGTRGNCEPIVCAVVLWIIICLMKGNVLQSAFWYGLVVHFRIYPIIYSIPIILVLDPNFFPSNQKPVLRNWSAVQGERPKDGCGQHTLHNLFKNIFTRNRLIFGLVSGLVFLFCTGLFFCLYEWEFLHEALLYHLTRTDPRHNFSIYFYHIYLHYGQDTSVVEKLISFLPQFFVQLVLIFCFAQDLTFCLFVQTVAFVAFNKVITAQYFVWFFCLLPLILPWSKMKLRWDGLSCILVWIGAQTHWLMWGYLLEFKGKNVFLQLWAAGLLFLAANIFILVMIIRHHKYASVFKALEYANSKNAAKLE*

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