SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G22130 | AT | Annotation by Michelle Graham. TAIR10: mannosyltransferase family protein | chr5:7337486-7339831 REVERSE LENGTH=450 | SoyBase | E_val: 0 | ISS |
| GO:0006506 | GO-bp | Annotation by Michelle Graham. GO Biological Process: GPI anchor biosynthetic process | SoyBase | N/A | ISS |
| GO:0009790 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development | SoyBase | N/A | ISS |
| GO:0009832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis | SoyBase | N/A | ISS |
| GO:0030244 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process | SoyBase | N/A | ISS |
| GO:0051301 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell division | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005789 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum membrane | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0000030 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: mannosyltransferase activity | SoyBase | N/A | ISS |
| GO:0016757 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups | SoyBase | N/A | ISS |
| GO:0016758 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups | SoyBase | N/A | ISS |
| GO:0051751 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: alpha-1,4-mannosyltransferase activity | SoyBase | N/A | ISS |
| KOG3893 | KOG | Mannosyltransferase | JGI | ISS | |
| PTHR12886 | Panther | PIG-M MANNOSYLTRANSFERASE | JGI | ISS | |
| PF05007 | PFAM | Mannosyltransferase (PIG-M) | JGI | ISS | |
| UniRef100_G7LHL5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: GPI mannosyltransferase n=1 Tax=Medicago truncatula RepID=G7LHL5_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KTS4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KTS4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g16980 not represented in the dataset |
Glyma08g16980 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g159600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g16980.1 sequence type=CDS gene model=Glyma08g16980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCATCCTTAGATATTCATTCACTGCTTTTATTCTCTGCCATTTTCCGTGTTATTTTGATTGTGTATGGAGAGTGGCAAGATGCTCATATGGAGGTTAGATACACTGATGTTGACTACCTTGTCTTTTCTGATGCTGCTGCTTTAATGGCTGTGGGCGATTCCCCTTATAAGAGAACCACTTATCGCTATTCTCCTTTGCTTGCCTTTCTTCTCATTCCAAATTCGTTCATCCATCGCTCCTGGGGAAAGTTTCTTTTCTCGGCTTCAGATCTACTTGTGGGATATTTCATCTATTATATTTTAAAGCTACGGAAGGTTCCTGAAAATTTGTGCAACTATTCTGTCATGACTTGGCTCTTTAATCCATTTACCTTCACCATTGGGACACGTGGGAACTGTGAACCTATTGTTTGTGCTGTGGTATTGTGGATTATTATTTGTCTTATGAAAGGTAATGTGTTACAGTCAGCATTTTGGTATGGACTTGTTGTCCATTTCAGGATTTATCCTATAATTTACTCTATTCCTATAATCCTGGTTCTTGATCCGAACTTCTTCCCATCTAATCAGAAACCTGTCCTAAGGAACTGGAGTGCTGTTCAGGGAGAGAGACCCAAAGATGGTTGTGGCCAGCATACTTTACACAATCTATTTAAAAACATATTCACAAGGAACAGACTGATATTTGGACTGGTCTCTGGATTGGTTTTCCTCTTTTGTACTGGTCTTTTCTTCTGTTTATATGAGTGGGAATTCCTACACGAGGCGCTGTTGTACCATCTTACTCGAACAGATCCAAGGCATAACTTCTCCATCTATTTCTATCACATATATCTCCATTATGGGCAGGATACTTCAGTCGTGGAAAAGCTTATCTCCTTTTTGCCCCAATTTTTTGTTCAGCTGGTTCTTATCTTCTGCTTTGCACAAGATTTGACATTTTGCCTATTTGTGCAGACTGTGGCCTTTGTGGCATTCAATAAGGTGATTACAGCACAGTATTTCGTTTGGTTCTTTTGCTTGTTGCCTCTAATACTTCCTTGGAGTAAAATGAAACTTAGATGGGATGGATTATCTTGCATTCTTGTGTGGATTGGGGCTCAGACCCATTGGTTGATGTGGGGCTACCTGCTTGAGTTCAAGGGTAAAAATGTCTTCTTACAGCTTTGGGCGGCAGGCTTACTGTTTCTAGCAGCCAACATATTTATCCTCGTCATGATTATTCGTCACCATAAATATGCTTCAGTTTTCAAAGCTTTAGAATATGCTAACTCCAAGAATGCAGCTAAGCTTGAATGA
>Glyma08g16980.1 sequence type=predicted peptide gene model=Glyma08g16980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASLDIHSLLLFSAIFRVILIVYGEWQDAHMEVRYTDVDYLVFSDAAALMAVGDSPYKRTTYRYSPLLAFLLIPNSFIHRSWGKFLFSASDLLVGYFIYYILKLRKVPENLCNYSVMTWLFNPFTFTIGTRGNCEPIVCAVVLWIIICLMKGNVLQSAFWYGLVVHFRIYPIIYSIPIILVLDPNFFPSNQKPVLRNWSAVQGERPKDGCGQHTLHNLFKNIFTRNRLIFGLVSGLVFLFCTGLFFCLYEWEFLHEALLYHLTRTDPRHNFSIYFYHIYLHYGQDTSVVEKLISFLPQFFVQLVLIFCFAQDLTFCLFVQTVAFVAFNKVITAQYFVWFFCLLPLILPWSKMKLRWDGLSCILVWIGAQTHWLMWGYLLEFKGKNVFLQLWAAGLLFLAANIFILVMIIRHHKYASVFKALEYANSKNAAKLE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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