Report for Sequence Feature Glyma08g16970
Feature Type: gene_model
Chromosome: Gm08
Start: 12455216
stop: 12459216
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g16970
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G05590 AT
Annotation by Michelle Graham. TAIR10: beta-hexosaminidase 2 | chr1:1669871-1671686 FORWARD LENGTH=580
SoyBase E_val: 0 ISS
GO:0005975 GO-bp
Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0003824 GO-mf
Annotation by Michelle Graham. GO Molecular Function: catalytic activity
SoyBase N/A ISS
GO:0004553 GO-mf
Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds
SoyBase N/A ISS
GO:0004563 GO-mf
Annotation by Michelle Graham. GO Molecular Function: beta-N-acetylhexosaminidase activity
SoyBase N/A ISS
GO:0015929 GO-mf
Annotation by Michelle Graham. GO Molecular Function: hexosaminidase activity
SoyBase N/A ISS
GO:0035251 GO-mf
Annotation by Michelle Graham. GO Molecular Function: UDP-glucosyltransferase activity
SoyBase N/A ISS
GO:0043169 GO-mf
Annotation by Michelle Graham. GO Molecular Function: cation binding
SoyBase N/A ISS
KOG2499
KOG
Beta-N-acetylhexosaminidase
JGI ISS
PTHR22600 Panther
BETA-HEXOSAMINIDASE
JGI ISS
PF00728 PFAM
Glycosyl hydrolase family 20, catalytic domain
JGI ISS
PF02838 PFAM
Glycosyl hydrolase family 20, domain 2
JGI ISS
UniRef100_G7IQQ5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Beta-hexosaminidase subunit beta n=1 Tax=Medicago truncatula RepID=G7IQQ5_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1KTS3 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KTS3_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g16970
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Gene model name correspondences to Glyma08g16970 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g159500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g16970
Coding sequences of Glyma08g16970
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g16970.1 sequence type=CDS gene model=Glyma08g16970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGACGCAACAAGAATCAACCATGTCACTAATATTCTTACAACTACTTTTACTCTTGTCATGCCTAACACTGAACAATAGTATTGCAGAATCAACCACCATCATCAATGTGTGGCCCAAACCAAGGAACCTTACATGGTCCCCACCATACCAAACCACCCTCCTCTCCTCCACATTCACCATCACCACCACCACCAACCACCACAACAAGCATCTCTCCATCGCCATCCGCCGCTACCAGAACCTCATCAAATCCGAGCACCACCACCCACTTGTCCCACAAGCAGTCAACATCTCCAACAAATACCTCCCACCACTGCAGACTCTCAAGGTCACAGTGGTGGACACTGCTGCAGAACTCGTCCACGCCGTGGACGAGTCCTACACTCTCTCCATCCTCCCTTCCTCATGTGCTACCCTCACTGCAAAGACTGTATGGGGTGCCATGCGAGGCTTGGAAACATTCTCCCAGCTCGCATGGGGCCACCCCACGCAGGTTCCAGTGGGCGTGCACGTGTGTGACTCCCCACTCTATGCCCACCGCGGTGTCATGGTGGACACCGCGAGGAACTATTATCCCGTGAAGGACTTGATGAGGACAGTGAAAGCCTTGAGCATGAACAAGCTCAACGTGCTTCACTTGCACCTCACGGATGCAGAATCTTTCCCTTTGGTGCTTCCTTCGGAACCTGCCTTGGCTGAAAAGGGGGCTTATGCCCCTCACATGGTCTACTCACCCAAGGATGTCAAAAAACTTGTAGAATTTGGTCTTGATCATGGGGTTCGGATAATACCTGAGATTGACACACCTGGACACACAGCATCTTGGGCATTAGCCCACCCTGACATTGTAACATGTGCCAACATGTTCTGGTGGCCAGCCGGAAGGGATTGGCCACATAGGTTTGCTTCACAACCAGGAACAGGACATTTGAACCCCTTAAACCCCAAGACTTACCAAGTCCTAAAGAATGTCATACACGACATAACCACATTGTTCCCAGAACCATTTTTCCACTCTGGTACTGATGAAATAGTACCAGGCTGCTGGAAAACTGACCCTGCAATTCAGAAATACCTATCAAATGGTGGAACCCTCAACCAACTTCTCGAGAAGTATATCAACAACACCCTCCCTTTCATTGTGTCCCTCAACCACACCGTTGTCTTCTGGGAAGATGTTTTACTGGACAACATAGTCCATGTGCCATCTGCAATCCTTCCCAAGGAGCATGTGATTCTGCAGACATGGCACAATGGACATAACCACACTAAGAAGATAGTTTCTGCCGGATACCGAACCATCGTGTCATCGGCGGAATTCTATTATCTGGATTGTGGACATGGCTCCTATGTTGGCAACAACAGTGCATATGACAATCAAGATGGTGACATGGGCAATGGCGGCTCTTGGTGTGCACCTTTCAAGACATGGCAGACCATATACAACTATGACATAGCATATGGGTTGAGTGAGGGGGAAGCAAAGTTGGTTTTGGGAGGAGAGGTGGCACTTTGGTCAGAACAATCTGATCCAACTGTTTTGGATGCAAGAATTTGGCCAAGAGCTTCTGCACTGGCTGAGTCAATGTGGTCAGGAAATAGAGATGAAAAGGGTGTGAAGAGATATGCAGAGGCCACAGATAGATTGAATGAATGGAGAAGCAGAATGGTAAGCAGAGGAATAGGTGCCGAGCCCATTCAGCCATTTTATTGTGTTAAGAATCCTGGCATGTGTAACACAGTGCATCCAGTCTAG
Predicted protein sequences of Glyma08g16970
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g16970.1 sequence type=predicted peptide gene model=Glyma08g16970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MTQQESTMSLIFLQLLLLLSCLTLNNSIAESTTIINVWPKPRNLTWSPPYQTTLLSSTFTITTTTNHHNKHLSIAIRRYQNLIKSEHHHPLVPQAVNISNKYLPPLQTLKVTVVDTAAELVHAVDESYTLSILPSSCATLTAKTVWGAMRGLETFSQLAWGHPTQVPVGVHVCDSPLYAHRGVMVDTARNYYPVKDLMRTVKALSMNKLNVLHLHLTDAESFPLVLPSEPALAEKGAYAPHMVYSPKDVKKLVEFGLDHGVRIIPEIDTPGHTASWALAHPDIVTCANMFWWPAGRDWPHRFASQPGTGHLNPLNPKTYQVLKNVIHDITTLFPEPFFHSGTDEIVPGCWKTDPAIQKYLSNGGTLNQLLEKYINNTLPFIVSLNHTVVFWEDVLLDNIVHVPSAILPKEHVILQTWHNGHNHTKKIVSAGYRTIVSSAEFYYLDCGHGSYVGNNSAYDNQDGDMGNGGSWCAPFKTWQTIYNYDIAYGLSEGEAKLVLGGEVALWSEQSDPTVLDARIWPRASALAESMWSGNRDEKGVKRYAEATDRLNEWRSRMVSRGIGAEPIQPFYCVKNPGMCNTVHPV*