SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G44260 | AT | Annotation by Michelle Graham. TAIR10: Plant protein of unknown function (DUF946) | chr2:18295988-18297739 FORWARD LENGTH=553 | SoyBase | E_val: 3.00E-77 | ISS |
| GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PTHR17204 | Panther | PRE-MRNA PROCESSING PROTEIN PRP39-RELATED | JGI | ISS | |
| PTHR17204:SF7 | Panther | PRE-MRNA PROCESSING-RELATED | JGI | ISS | |
| PF06101 | PFAM | Plant protein of unknown function (DUF946) | JGI | ISS | |
| UniRef100_A2Q3B2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Vacuolar protein sorting-associated protein n=1 Tax=Medicago truncatula RepID=A2Q3B2_MEDTR | SoyBase | E_val: 1.00E-99 | ISS |
| UniRef100_UPI0002338B66 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002338B66 related cluster n=1 Tax=unknown RepID=UPI0002338B66 | SoyBase | E_val: 0 | ISS |
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Glyma08g16962 not represented in the dataset |
Glyma08g16962 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g159400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g16962.2 sequence type=transcript gene model=Glyma08g16962 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTGCTTCTTTTTTCATCATCCTTCATCTTCTTCTTCTCCCTCTTCCTCTCCCTTTCTCTCTTTCCCAATGTCATCTCTCCACCTTCTTCCCGCCGCGTTATCATCGCCCCCAACTCCACATTCCTCCTCCACATGACAAAAAGGAGAAAAACGAATCTATGGAAAATCATTCAGAAAAACCAAGCTCTCCCCATTAATTCCATATTCAAGCTTCCTGCACCTGTTACAAATTCTTGGCCTCCAGGTGGTAATTTTGCAAGTGGAACAATTGATCTTGGTGGGCTGCAAGTGTGTGAAGCATCAACATTCAACAAAGTTTGGGGCACCTATGGTGGTGGACCTGATGATCAAGGTTTCTCCATTTTTGAGCCATCAGGAGTACCTAAAGGCTTCTCCATGTTGGGTAGCTACAGCCAGCCCAACAACAAGCCTCTTTCTGGATATGTTCTTGTGGCAAAAGATGTGTCCACAAACACCAGCAACCCTAGTCTAAAGCAACCACTTGATTACACACTTGTGTGGAACAGTGCATCTCTGGAGATTGACCAAGATGGTCCCATCTATGTTTGGCTTCCAATAGCACCGAATGGGTATAAAGCTGTAGGCCATGTTGTCACCACAACACCAACTAAGCCTTCACTTGAAAAAATCATGTGTGTCAGGTTAGACCTCACTGACCAGTGTGAGACAAATTCATTCATTTGGGATTCAGACAACTTCAATTTTCTTGATGTCAGACCAAGCAATAGGGGGATTCAAGCACCTGGTGTTAGAGTAGGCACCTTTGTTGCACAAAATGCAAGTCTTAACTCTCCATCTATTGCTTGTTTGAGAAACACCAATGCCATACCAAAATACATGCCTAATCTACCACAAATCAAGGCAATTCTTCAAGTTTACTCTCCAGTTATGTCCTTGCTGTTAGAACAAATCTCTTTTAACCTGTGATATTACAAACTACAAAGAAACACAGGTTATTAATAAAATGCGGAAATTACAGATCAAATCATACCTCCAGCCATTGCTATGAAGAGTTTCTTGTTTTGGTTCTTCCAAGCTCTCTCTCTTCCACTCTCTAGATGGTGTATAAGACTGAATTCGAAGGGATGAGCTCAGGGACCAAATTCATGTGCTTATATAGGCATTCTACCATCAAGAATGCATTTATCAGCCATTATCACTCATTATTG
>Glyma08g16962.1 sequence type=CDS gene model=Glyma08g16962 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTGCCAATGTGGGCATTATCTGTGTTTTGTTTCTCTTGGCAACACAGACAGTAGGGGTTCCTGCATTTGCACCATGGAAGAAGCTGCATGTGCCATGGAAGAAGCATTCTAAAGGGAAAATCATTCAGAAAAACCAAGCTCTCCCCATTAATTCCATATTCAAGCTTCCTGCACCTGTTACAAATTCTTGGCCTCCAGGTGGTAATTTTGCAAGTGGAACAATTGATCTTGGTGGGCTGCAAGTGTGTGAAGCATCAACATTCAACAAAGTTTGGGGCACCTATGGTGGTGGACCTGATGATCAAGGTTTCTCCATTTTTGAGCCATCAGGAGTACCTAAAGGCTTCTCCATGTTGGGTAGCTACAGCCAGCCCAACAACAAGCCTCTTTCTGGATATGTTCTTGTGGCAAAAGATGTGTCCACAAACACCAGCAACCCTAGTCTAAAGCAACCACTTGATTACACACTTGTGTGGAACAGTGCATCTCTGGAGATTGACCAAGATGGTCCCATCTATGTTTGGCTTCCAATAGCACCGAATGGGTATAAAGCTGTAGGCCATGTTGTCACCACAACACCAACTAAGCCTTCACTTGAAAAAATCATGTGTGTCAGGTTAGACCTCACTGACCAGTGTGAGACAAATTCATTCATTTGGGATTCAGACAACTTCAATTTTCTTGATGTCAGACCAAGCAATAGGGGGATTCAAGCACCTGGTGTTAGAGTAGGCACCTTTGTTGCACAAAATGCAAGTCTTAACTCTCCATCTATTGCTTGTTTGAGAAACACCAATGCCATACCAAAATACATGCCTAATCTACCACAAATCAAGGCAATTCTTCAAGTTTACTCTCCAGTTATGTCCTTGCTGTTAGAACAAATCTCTTTTAACCTGTGA >Glyma08g16962.2 sequence type=CDS gene model=Glyma08g16962 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACAAAAAGGAGAAAAACGAATCTATGGAAAATCATTCAGAAAAACCAAGCTCTCCCCATTAATTCCATATTCAAGCTTCCTGCACCTGTTACAAATTCTTGGCCTCCAGGTGGTAATTTTGCAAGTGGAACAATTGATCTTGGTGGGCTGCAAGTGTGTGAAGCATCAACATTCAACAAAGTTTGGGGCACCTATGGTGGTGGACCTGATGATCAAGGTTTCTCCATTTTTGAGCCATCAGGAGTACCTAAAGGCTTCTCCATGTTGGGTAGCTACAGCCAGCCCAACAACAAGCCTCTTTCTGGATATGTTCTTGTGGCAAAAGATGTGTCCACAAACACCAGCAACCCTAGTCTAAAGCAACCACTTGATTACACACTTGTGTGGAACAGTGCATCTCTGGAGATTGACCAAGATGGTCCCATCTATGTTTGGCTTCCAATAGCACCGAATGGGTATAAAGCTGTAGGCCATGTTGTCACCACAACACCAACTAAGCCTTCACTTGAAAAAATCATGTGTGTCAGGTTAGACCTCACTGACCAGTGTGAGACAAATTCATTCATTTGGGATTCAGACAACTTCAATTTTCTTGATGTCAGACCAAGCAATAGGGGGATTCAAGCACCTGGTGTTAGAGTAGGCACCTTTGTTGCACAAAATGCAAGTCTTAACTCTCCATCTATTGCTTGTTTGAGAAACACCAATGCCATACCAAAATACATGCCTAATCTACCACAAATCAAGGCAATTCTTCAAGTTTACTCTCCAGTTATGTCCTTGCTGTTAGAACAAATCTCTTTTAACCTGTGA
>Glyma08g16962.1 sequence type=predicted peptide gene model=Glyma08g16962 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGANVGIICVLFLLATQTVGVPAFAPWKKLHVPWKKHSKGKIIQKNQALPINSIFKLPAPVTNSWPPGGNFASGTIDLGGLQVCEASTFNKVWGTYGGGPDDQGFSIFEPSGVPKGFSMLGSYSQPNNKPLSGYVLVAKDVSTNTSNPSLKQPLDYTLVWNSASLEIDQDGPIYVWLPIAPNGYKAVGHVVTTTPTKPSLEKIMCVRLDLTDQCETNSFIWDSDNFNFLDVRPSNRGIQAPGVRVGTFVAQNASLNSPSIACLRNTNAIPKYMPNLPQIKAILQVYSPVMSLLLEQISFNL* >Glyma08g16962.2 sequence type=predicted peptide gene model=Glyma08g16962 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTKRRKTNLWKIIQKNQALPINSIFKLPAPVTNSWPPGGNFASGTIDLGGLQVCEASTFNKVWGTYGGGPDDQGFSIFEPSGVPKGFSMLGSYSQPNNKPLSGYVLVAKDVSTNTSNPSLKQPLDYTLVWNSASLEIDQDGPIYVWLPIAPNGYKAVGHVVTTTPTKPSLEKIMCVRLDLTDQCETNSFIWDSDNFNFLDVRPSNRGIQAPGVRVGTFVAQNASLNSPSIACLRNTNAIPKYMPNLPQIKAILQVYSPVMSLLLEQISFNL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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