Glyma08g16891 - SoyBase

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Report for Sequence Feature Glyma08g16891

Feature Type:	gene_model
Chromosome:	Gm08
Start:	12397050
stop:	12401367
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g16891

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G31920	AT	Annotation by Michelle Graham. TAIR10: Plant protein of unknown function (DUF936) \| chr2:13574053-13576367 REVERSE LENGTH=585	SoyBase	E_val: 8.00E-91	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
PF06075	PFAM	Plant protein of unknown function (DUF936)	JGI		ISS
UniRef100_A2Q3C0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Legume lectin, beta domain n=1 Tax=Medicago truncatula RepID=A2Q3C0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002338B64	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338B64 related cluster n=1 Tax=unknown RepID=UPI0002338B64	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g16891

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g16891 not represented in the dataset	Glyma08g16891 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g16891

Paralog	Evidence	Comments
Glyma15g42190	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g16891 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g158800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g16891

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g16891

Limit To All Plant Sequences

>Glyma08g16891.1   sequence type=CDS   gene model=Glyma08g16891   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTCCCTGACCCCGGGCGTCCTCTCGAAGCTCCTGGACAACGCGGGTTCCAAGGTAACCGCCGCTCACCGGCAGGCCCTCCTGCAGGTGACGGAGATCGTGCCGCGCCTCTCCTCAACCTCCCCATTACAGAGCCGCGGCTACTTTTTAAAACTCTCGGACTCCCTCCACTCCGCCTACGTCTCCGTCCCCGACGCCGACGCCGACCTCATCTGCGCCGGCAAGCTCCACCTCGGCCAGTTCGTCTACGTCACACGCCTCGACGCCGCCTCCCCCGTCCCCCTTGTCCGCGGCCTCAACGTGCTCCCCCGCCGGAGGCCCTGCGTCGGGAACCCTACTGAGTTGGTTCCCAGCGAGAGGCTTTGCGTCGCCACTCCGAAGAAAAAGAAGAGAGAAGAGGTTGTTAAGAAGGAGAAGGGGTTGGAGATGATGAGGAGGTTGAGTTTGGATTCTTCTAGAAGGGTTTGGGATCAGAGTCCGGTTGCAAAACGGAAAACCGCTTCTGCGAGTTCGCTTTCGAACAATCTTAAGGCCAAGAAGTCTAACTCTAACCCCACTTCGCTTAACGTGATAGACAAGAAGGTTGTTTCTGTCAAACCTGATTCTCCACTAAAATCTCCAACATCAAGTGTCTCACCCTTGAAGAATAAAAACGAGAACCTGTGTCCAAAATCATTGACAATCACACCTCCGAGGAAGAGTACTAGTACTAGTACTAGGTCACCCTGTGGTGGCACTGTTCATAGCCCACTTGTTAAGGTCCCCCTCAATTTCAAGACTTGGTGTTATGATACTCCTGCATGTTGGGAAGATGTCTCACTCCCCATGTGTGATCTTGGAAAGCAAGTTGTGACTCATAGAACTGTTGCCTTTTTAGCGGCTGTGCGGTCTCTTGAAGAAGCATCTGCTACAGATTCTGTGATCCAATGCATGTGCATGTATGCAGAACTTTGCCAGTCTGGTCAAACACATTCTCCTGGATCACTTGTGAAGCAGTTTTTGGAGCTTCACCTGAGTTTGCAGAGAGTAACAGTGCTGTTTGATTCGTTACTCAACCCACTTCCTGAAACAAAGTCAAGCAGCCACTCTACCCTACAGTGTCTAACAGAAGATGCATGCAAAGTTCCCACCCGAAAGAATGCTATATCTTGGGTACAAGCTGCCGTAGGTACCAATCTTTCCAAATTCAATCTATTTGAAACACAGGCGAAAAGTGAGGTTCTAAATGGTGAGAAATGTCATTATGTTGTCATTGAGAATACTCCCGAGGACATCAATACTGAGACTTCACCTGCTCAAAACAAGCAAAATCGTGTAACTCAAGCAAACCACTTGCCAAATTCAACTGCTAAAAGACTTCCTTCTTCAAAGCGGAATCTCTTGGCAGCAAAGAACAAGGATGCTGACAAACATGATCGATCAAAAGAAATCAAATTAAAAGAGGCTGCGAGTTTGGCAGAAAAACTGCTTGAGGCATCTAGCGAATGGTTCCTGAAGTACTTGGAGGAGTCTCTGAGTAATGAGTTCGGGTTGAAAAATGAAGGGAACACTGAAATTGCAAGTCTTCTTGGACAACTCAAACAGGTGAATCACTGGTTAGATAATTTGGCTGGTGGAGATAAGGTTGATCACCGGGTAGAGAAGCTAAGGAAAAATTTGTACCGGTTTCTACTTGAGCATGTTAATTCTGCCGTTACTTCTAATTAG

Predicted protein sequences of Glyma08g16891

Limit To All Plant Sequences

>Glyma08g16891.1   sequence type=predicted peptide   gene model=Glyma08g16891   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASLTPGVLSKLLDNAGSKVTAAHRQALLQVTEIVPRLSSTSPLQSRGYFLKLSDSLHSAYVSVPDADADLICAGKLHLGQFVYVTRLDAASPVPLVRGLNVLPRRRPCVGNPTELVPSERLCVATPKKKKREEVVKKEKGLEMMRRLSLDSSRRVWDQSPVAKRKTASASSLSNNLKAKKSNSNPTSLNVIDKKVVSVKPDSPLKSPTSSVSPLKNKNENLCPKSLTITPPRKSTSTSTRSPCGGTVHSPLVKVPLNFKTWCYDTPACWEDVSLPMCDLGKQVVTHRTVAFLAAVRSLEEASATDSVIQCMCMYAELCQSGQTHSPGSLVKQFLELHLSLQRVTVLFDSLLNPLPETKSSSHSTLQCLTEDACKVPTRKNAISWVQAAVGTNLSKFNLFETQAKSEVLNGEKCHYVVIENTPEDINTETSPAQNKQNRVTQANHLPNSTAKRLPSSKRNLLAAKNKDADKHDRSKEIKLKEAASLAEKLLEASSEWFLKYLEESLSNEFGLKNEGNTEIASLLGQLKQVNHWLDNLAGGDKVDHRVEKLRKNLYRFLLEHVNSAVTSN*

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