SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G13000 | AT | Annotation by Michelle Graham. TAIR10: glucan synthase-like 12 | chr5:4110445-4121202 REVERSE LENGTH=1955 | SoyBase | E_val: 0 | ISS |
| GO:0000226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0000911 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation | SoyBase | N/A | ISS |
| GO:0006075 | GO-bp | Annotation by Michelle Graham. GO Biological Process: (1->3)-beta-D-glucan biosynthetic process | SoyBase | N/A | ISS |
| GO:0006346 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing | SoyBase | N/A | ISS |
| GO:0007267 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell-cell signaling | SoyBase | N/A | ISS |
| GO:0009556 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microsporogenesis | SoyBase | N/A | ISS |
| GO:0009616 | GO-bp | Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing | SoyBase | N/A | ISS |
| GO:0010267 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference | SoyBase | N/A | ISS |
| GO:0016246 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA interference | SoyBase | N/A | ISS |
| GO:0031048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA | SoyBase | N/A | ISS |
| GO:0035196 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA | SoyBase | N/A | ISS |
| GO:0051567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation | SoyBase | N/A | ISS |
| GO:0052543 | GO-bp | Annotation by Michelle Graham. GO Biological Process: callose deposition in cell wall | SoyBase | N/A | ISS |
| GO:0000148 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: 1,3-beta-D-glucan synthase complex | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0003843 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 1,3-beta-D-glucan synthase activity | SoyBase | N/A | ISS |
| GO:0016757 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups | SoyBase | N/A | ISS |
| PTHR12741 | Panther | UNCHARACTERIZED DUF605 | JGI | ISS | |
| PTHR12741:SF4 | Panther | gb def: Hypothetical protein F10M23.90 (AT4g26750/F10M23 90) (Hypothetical protein AT4g2 | JGI | ISS | |
| PF02364 | PFAM | 1,3-beta-glucan synthase component | JGI | ISS | |
| UniRef100_G7KWP5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Callose synthase n=2 Tax=Medicago truncatula RepID=G7KWP5_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002338273 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002338273 related cluster n=1 Tax=unknown RepID=UPI0002338273 | SoyBase | E_val: 0 | ISS |
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Glyma08g16715 not represented in the dataset |
Glyma08g16715 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g16715.1 sequence type=CDS gene model=Glyma08g16715 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATTCCAAAATCCATATGTCGTAAATTCAGAGTGCGGTTCCATTATGGCCATCCAGATGTGTTTGATAGACTTTTCCACCTGACAAGAGGGGGGGTAAGCAAGGCTTCTAAGGTCATCAACTTGAGTGAGGATATATTTGCAGGCATGTATTTTAGTTACAACTCTACATTACGTGAAGGCAATGTCACTCATCACGAGTACATACAAGTGGGTAAAGGAAGGGATGTGGGTCTTAACCAGATATCAATGTTTGAAGCAAAAATCGCTGCTGGGAATGGTGAGCAAACAATGAGTAGAGACATATACAGGCTTGGACACCGTTTTGATTTCTTCCGAATGCTATCTTGTTATTACACTACCATTGGCTTCTATTTCAGTACCTTGATAACTGTCCTCACAGTTTATGTATTCCTTTATGGACGCCTCTATCTTGCCCTTAGTGGACTCGAAGAAGGTTTGAACCAAAAAAGAGCTATTCGAGACAACAAAGCTCTTCAAGTAGCTCTTGCTTCTCAGTCAGTTGTGCAAATTGGATTTTTGTTAGCCTTGCCTATGTTGATGGAAATTGGCTTGGAGAGGGGATTTCGTGAGGCTTTAAGTGAATTTGTACTAATGCAACTACAGTTGGCTCCTGTATTTTTCACATTTTCTCTTGGAACAAAAACACACTATTATGGAAGGACATTGCTTCATGGAGGTGCAGAGTACAAAAGCACTGGTCGCGGTTTTGTTGTGTTTCATGCCAAATTTGCTGATAACTATAGGCTTTATTCCCGCAGCCATTTTGTTAAAGGGATTGAATTGATGATTCTGCTTGTGGTCTACCATATATTTGGCCATGAATACAGAGGAGTGCTTGCCTATATTTTAATTACCGTAACAATGTGGTTCATGGTAGGGACATGGCTTTTTGCTCCCTTCCTTTTCAATCCATCAGGTTTTGAGTGGCAGAAGATAGTTGATGACTACACAGATTGGCAAAAATGGATAAGCAACCGTGGAGGCATTGGTGTATCTCCTGAAAAAAGTTGGGAATCCTGGTGGGAAAAGGAACATGAGCATCTCCGGCACTCCGGAAAGCGTGGTATCGCTACTGAGATAATATTATCCCTCCGCTTTTTCATTTATCAATATGGCCTTGTTTATCACCTTTCAATCACTGATAAGACTCAAAGTGTTTTGGTTTATGGTCTTTCTTGGATGATAATCTTTGTAATATTGGGTTTAATGAAGGGTGTATCTGTTGGCAGGCGCCGCCTCAGTGCAGACTACCAACTTCTATTTCGATTGATCGTGGGTTCTATTTTCTTAACATTCCTTGCCATCTTCATAATCCTAATAGCAGTTGCCAAGATGACAATTAAGGACATAATAGTCTGCATTCTTGCAGTCATGCCAACGGGCTGGGGAATTCTGCTGATTGCACAAGCTTGCAAGCCTCTCATTAAAAAAACTTGGTTTTGGGGGTCTGTTCGAGCACTTGCACGCGGATATGAAGTAATAATGGGCTTGCTTCTCTTCACACCAGTTGCTTTCTTGGCATGGTTCCCATTTGTTTCAGAGTTTCAAACTAGAATGCTTTTCAACCAAGCTTTTAGCAGAGGTTTGCAGATTTCTCGTATTCTTGGTGGACAAAGTAATGAACGCTCCTCTAACCACAAAGAGTGA
>Glyma08g16715.1 sequence type=predicted peptide gene model=Glyma08g16715 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIPKSICRKFRVRFHYGHPDVFDRLFHLTRGGVSKASKVINLSEDIFAGMYFSYNSTLREGNVTHHEYIQVGKGRDVGLNQISMFEAKIAAGNGEQTMSRDIYRLGHRFDFFRMLSCYYTTIGFYFSTLITVLTVYVFLYGRLYLALSGLEEGLNQKRAIRDNKALQVALASQSVVQIGFLLALPMLMEIGLERGFREALSEFVLMQLQLAPVFFTFSLGTKTHYYGRTLLHGGAEYKSTGRGFVVFHAKFADNYRLYSRSHFVKGIELMILLVVYHIFGHEYRGVLAYILITVTMWFMVGTWLFAPFLFNPSGFEWQKIVDDYTDWQKWISNRGGIGVSPEKSWESWWEKEHEHLRHSGKRGIATEIILSLRFFIYQYGLVYHLSITDKTQSVLVYGLSWMIIFVILGLMKGVSVGRRRLSADYQLLFRLIVGSIFLTFLAIFIILIAVAKMTIKDIIVCILAVMPTGWGILLIAQACKPLIKKTWFWGSVRALARGYEVIMGLLLFTPVAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGQSNERSSNHKE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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