Report for Sequence Feature Glyma08g16700
Feature Type: gene_model
Chromosome: Gm08
Start: 12238616
stop: 12240570
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g16700
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G19900 AT
Annotation by Michelle Graham. TAIR10: PRLI-interacting factor, putative | chr5:6728561-6730045 REVERSE LENGTH=494
SoyBase E_val: 7.00E-41 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_B9DF92 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: AT5G19900 protein n=1 Tax=Arabidopsis thaliana RepID=B9DF92_ARATH
SoyBase E_val: 3.00E-38 ISS
UniRef100_I1KTQ0 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KTQ0_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g16700
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma08g16700
Paralog Evidence Comments
Glyma15g42340 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g16700 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g157300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g16700
Coding sequences of Glyma08g16700
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g16700.1 sequence type=CDS gene model=Glyma08g16700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAACGACCTGCACGAAATGATGCCTTACTCTCAGATCTTTCAAAACAACCGAAACTACGCCGTTTGGCCGCCGTACCCGCCGGAAAACGCGGCGGTGTTCCCTCACCCTACGGCGTTCAATCCGCATCCGGGTCGGGTAACTGGAAACAAAAGGAAAGACTTTTACCGAACCGGTTCGGGTCCGCCGGTGATCCGCTCCGGCGCGAAAGGTTGCCGGATTAACCACCCGAAGCGAATTCTCGGCCGCGGCGGTGCCGCCAATCGGCTCACGCCGCCGTTCGCTCCGCGCAACACAACGTCGTTCATAATCCGGACGAAGAATTGTGGCGGCATGGTGTCGCCGCCGACTCCTGAGGCGGCGACATCATCCCCGGCGATCCTGCCGGCGGCGTCTCTGTCTCCGGCGACGTTCGACGAGAAGGCTGCGAAGGAGCAGTGGGGATTCAACGGCTACGGCTCCATGAAGGGCCTTATTCGGCTCCGGCCAGGAAATTGTGATTCCGGCGCCGGCAGGTTCGAAATGGTGTACCCTAATTCCGGTGAAGAACATAAAAACTTGGACAAAAGGGTTGCTGAACAAGATACCCATATTGCACAGCTTGAAGAGCAGAATTTGACGCTGAAGGAGAGACTTTTGTTCATGGAAAGACAATTGGATGACATGAGAAGGAGGGTTCAGTTCTTGGAGACCTACGGAACGACCAGCCGCGGTGGTGAGGGCGGGGCGGAGAATTTCCCCGCAGCCGGAGATGTTTGCTCAGTAAAGAGCTATATAAACAATTCTGGTGTTGACGGTGATAATAATAATGTTGATGAAAATAATAATTGGGAAGATATTTTGCAGTGGTAG
Predicted protein sequences of Glyma08g16700
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g16700.1 sequence type=predicted peptide gene model=Glyma08g16700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MNDLHEMMPYSQIFQNNRNYAVWPPYPPENAAVFPHPTAFNPHPGRVTGNKRKDFYRTGSGPPVIRSGAKGCRINHPKRILGRGGAANRLTPPFAPRNTTSFIIRTKNCGGMVSPPTPEAATSSPAILPAASLSPATFDEKAAKEQWGFNGYGSMKGLIRLRPGNCDSGAGRFEMVYPNSGEEHKNLDKRVAEQDTHIAQLEEQNLTLKERLLFMERQLDDMRRRVQFLETYGTTSRGGEGGAENFPAAGDVCSVKSYINNSGVDGDNNNVDENNNWEDILQW*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
