SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G64070 | AT | Annotation by Michelle Graham. TAIR10: phosphatidylinositol 4-OH kinase beta1 | chr5:25637492-25643902 REVERSE LENGTH=1121 | SoyBase | E_val: 0 | ISS |
| GO:0006661 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol biosynthetic process | SoyBase | N/A | ISS |
| GO:0009860 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen tube growth | SoyBase | N/A | ISS |
| GO:0046854 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol phosphorylation | SoyBase | N/A | ISS |
| GO:0048015 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol-mediated signaling | SoyBase | N/A | ISS |
| GO:0048768 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair cell tip growth | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0030659 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasmic vesicle membrane | SoyBase | N/A | ISS |
| GO:0035619 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: root hair tip | SoyBase | N/A | ISS |
| GO:0004430 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 1-phosphatidylinositol 4-kinase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0016772 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups | SoyBase | N/A | ISS |
| GO:0016773 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphotransferase activity, alcohol group as acceptor | SoyBase | N/A | ISS |
| GO:0017137 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: Rab GTPase binding | SoyBase | N/A | ISS |
| GO:0043424 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein histidine kinase binding | SoyBase | N/A | ISS |
| KOG0903 | KOG | Phosphatidylinositol 4-kinase, involved in intracellular trafficking and secretion | JGI | ISS | |
| PTHR10048 | Panther | PHOSPHATIDYLINOSITOL KINASE | JGI | ISS | |
| PF00454 | PFAM | Phosphatidylinositol 3- and 4-kinase | JGI | ISS | |
| UniRef100_G7LE13 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Phosphatidylinositol 4-kinase n=1 Tax=Medicago truncatula RepID=G7LE13_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233826E | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233826E related cluster n=1 Tax=unknown RepID=UPI000233826E | SoyBase | E_val: 0 | ISS |
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Glyma08g16620 not represented in the dataset |
Glyma08g16620 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g32460 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g156400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g16620.1 sequence type=CDS gene model=Glyma08g16620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGAGGTTTTTAGGGTTGACTCTTGGTTATGCTGAAGAACCCCGTGAAATAGCATCGAGGTCGAACCTGACCAGTGATTCTGGTGAAAATGGGTGGCTCATCAGGTTCTTTGACTCGGCATTCTTCTGCGAGTGGATTGCTGTTAGCTACTTGTACAAGCATGATCATGCCGGGGTGCGTGATTATCTCTGTAATAGAATGTATACTCTTCCTTTGCAAGGTGTTGAGAGTTATTTGTTCCAGATATGTTACATGATGATACACAAGCCTAGTCCCTCCTTGGATAAGTATGTGATAGACGTGTGCTCGAAGTCGCTTAAGATTGCTTTGAAGGTGCATTGGTTCTTGATGGCGGAACTTGAGGACTCTGATGATAATGAAGGGATTAGTGGGATTCAGAAGAAGTGTCAGATTGCTGCCACCTTGATGGGTGAGTGGCCACCTCTAATACGGCCCCTAACTGAACCCCCGAGTCCCGGAGGCAAAAGCCAAGTTTTGAATAGGTTACTGTCGTCGAAAAATCTCTTGTTGTCACTAACATCCTCACCACCTGCTCAAAAGCCTTTATCATTTTCACCGTCCTCAGGAAACAATTTGCAAGAGGATGACAAACCACTTTCTCCTGATGAGAATAAGATATTCAAGAAGTTTATGCCGAGCCCGAAGGTTAGAGATGCTTTGCTTTTTCGGAAGTCAGTGGACAAAGACGATGATGGTTCAGAAAAGGATGGTTTTTTCAAGAGGCTTTTGAGAGATAGCAAAGGTGATGATGAACTGGGCCAAAAAATTCGTGATTCATTTCTGTTTAGGAAGTCGTCTGTGAAAGATGATGAAGACTCTGAAAAAGAGAATTTCTTTAAAAGGTTCTTAAGGGACAGTAGAGGTGACGATGAAGACTCGGAAAAAGATGGTTTCTTTCGAAGGCTCTTAAGGGATAGTAGAAGCGAAGATGAAGATGTAGCTTCAAGTTCAGAGGGATTATTTAAGAGGTTGTTTCGTGACAGCAAGAATGATTCTGAGGACAGAACACGTACTAAAACAATAGAAGATGAAGATAAAGAGGGATTTTTCCGAAAGTTTTTCCGGGAGAAATCTGAAGATAGGAAGGATGGGAGTCATAGGAATGATAATAGAGATGTGGCTAATTTTGAAGAGAAATATGCCAAACCTGCTGAAGAGGATGAAAAAGAAGGGTTTTTCCGGAAATTATTTAAGGATAAATCTGAGGACAAGAAAGATACAAATGATAAAATTGAAGAGGGTACTGCCAATGGTGAGGAAGAAGAGTCTTCTGAGTTTTCCTTGTTCAGAAGACTATTTCGCGTGCACCCTGAAGAGGCTAAAAGTAGTCTGTTCAATGAAAACAGTAATAATGGCGGTTTATTTGAAAGTAGTCCAGGTACAGAGAATTTTTTCCGTAAATTGTTCAGAGACCGTGACCGTTCAATTGAAGATTCAGAGCTATTGGGTTCAAAAAGACAGAAAGAGAAGCATCCTGGATCCCCAAAGCAGCAGAGTGAAAAGTCGAGCACAAAGCCTCCATTACCAATTAGTTTGTCTCAGTTCCGGAAAGGGGCTTATCATGACTCATTGGAGTTTGTGCAGTCATTATGTGATACATCATATGGGTTAGTGGATGTATTTCCCATTGAAGATCGCAAAAGTGCTCTTCGTGAGGCACTTGTAGAAATCAATCTACATGTAGCAGAGGTTCAGAACACTGGAGGAGTTTGTTTTCCATTGGGAAAGGGCATGTATCGTGTGCTTAATATACCTGAAGATGAAGCTGTTCTCTTGAATTCTAGGGAGAAGGCACCTTACCTGATCTGTGTAGAGGTTTTGAGATGTGAAATGCCAAGTAATTCCAAGGAGGCATCCAGTTCTCAGAAACTTTCTCAAGGGGGAATCCCTTTGGCAAATGGAGATGCTCTCATGCAAAAACCACCTCCTTGGGCTTATCCATTACGGACAGCACAAGAGGTGTACCGCAATAGCAACGATAGGATGTCCAGTTCAACTGCTCATGCAATTGACCAGGCGATGACTCATGTATCTGAGGCAAAAATCAAATTTGTTAGTGTGAATTTTTCTGTGGAAATGCAGTTAAATGGTCAGCCAGAGGAGATTGAAGTGGCCGATCTACACGGTGGCAGTCATCGTTCTGCTTCAATTCATAGAGAGGGTGTGTATGATGCAGCAGCTGCAGGACATGTCAGTGATTTGGAATGGGTACGAGTAGTGTTGACAGCCGATCCTGGGGTTAGATTGGAAGATATTGAGGATCAAGCACCGCCTCGGAGGAAGGAACATCGCCGTGTTCCAAGTACGGTGGCAATAGAGGAAGTAAAGGCTGCGGCAGCTAAAGGGGAAGCACCTCTTGGACTCCCTTTGAAAGGTGCTGGTCAAGATTCATCCGATGCACAACCAAGGGTTAATGGAATTACTCCCAAAGCCAGCGATGCCTTGTCTGGTGAACTTTGGGAGGCAAAGAAGGATAGGATATGCAAGGCTTCCATATATGGGAAGTTACCTGGTTGGGACTTGCGATCTGTTATTGTAAAGAGTGGTGATGATTGCAGGCAGGAGCATCTGGCTGTTCAACTTATTTCTCACTTCTATGATATTTTCCAAGAAGCTGGCCTACCCCTCTGGCTGCGCCCATATGAAGTTTTGTGTACTTCATCTTACACAGCTCTTATTGAAACAATTCCAGATACGGCTTCTCTACACTCTATCAAAAGTAGATATCCCAACATCTCAAGTTTACGTGAATTCTTCAATGCTAAGTATCAAGAAAATTCTCCCAGTTTTAAACTTGCCCAGAGAAACTTTGTTGAAAGTATGGCAGGATATTCCCTGGTGTGCTACTTTCTGCAGGTGAAGGATAGGCATAATGGGAACCTCCTATTGGATGAAGAAGGTCATATCATACATATCGATTTTGGCTTCATGCTTTCCAATTCACCTGGTGGTGTTAACTTTGAAAGTGCACCTTTCAAATTAACACGTGAACTTCTTGAGGTTATGGATTCTGATGCTGAGGGTGTTCCAAGCGAGTTCTTTGATTATTTTAAGGTTTTATGCATTCAAGGCTTCCTTACTTGCCGCAAGCATGCTGAGCGCATCATTCTTCTTGTTGAGATGTTGCAGGATTCAGATTTCCCATGCTTTAAAGGTGGTGCTCGGACAATACAGAACCTACGAAAGCGATTCCATCTCAGTTTAACTGAAGAGCAATGTGTCTCCTTGGTGCTTTCACTCATTAGCAGCAGCCTGGATGCTTGGAGGACACGGCAGTATGATTATTATCAGAGGGTTTTGAATGGAATATTATGA
>Glyma08g16620.1 sequence type=predicted peptide gene model=Glyma08g16620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVRFLGLTLGYAEEPREIASRSNLTSDSGENGWLIRFFDSAFFCEWIAVSYLYKHDHAGVRDYLCNRMYTLPLQGVESYLFQICYMMIHKPSPSLDKYVIDVCSKSLKIALKVHWFLMAELEDSDDNEGISGIQKKCQIAATLMGEWPPLIRPLTEPPSPGGKSQVLNRLLSSKNLLLSLTSSPPAQKPLSFSPSSGNNLQEDDKPLSPDENKIFKKFMPSPKVRDALLFRKSVDKDDDGSEKDGFFKRLLRDSKGDDELGQKIRDSFLFRKSSVKDDEDSEKENFFKRFLRDSRGDDEDSEKDGFFRRLLRDSRSEDEDVASSSEGLFKRLFRDSKNDSEDRTRTKTIEDEDKEGFFRKFFREKSEDRKDGSHRNDNRDVANFEEKYAKPAEEDEKEGFFRKLFKDKSEDKKDTNDKIEEGTANGEEEESSEFSLFRRLFRVHPEEAKSSLFNENSNNGGLFESSPGTENFFRKLFRDRDRSIEDSELLGSKRQKEKHPGSPKQQSEKSSTKPPLPISLSQFRKGAYHDSLEFVQSLCDTSYGLVDVFPIEDRKSALREALVEINLHVAEVQNTGGVCFPLGKGMYRVLNIPEDEAVLLNSREKAPYLICVEVLRCEMPSNSKEASSSQKLSQGGIPLANGDALMQKPPPWAYPLRTAQEVYRNSNDRMSSSTAHAIDQAMTHVSEAKIKFVSVNFSVEMQLNGQPEEIEVADLHGGSHRSASIHREGVYDAAAAGHVSDLEWVRVVLTADPGVRLEDIEDQAPPRRKEHRRVPSTVAIEEVKAAAAKGEAPLGLPLKGAGQDSSDAQPRVNGITPKASDALSGELWEAKKDRICKASIYGKLPGWDLRSVIVKSGDDCRQEHLAVQLISHFYDIFQEAGLPLWLRPYEVLCTSSYTALIETIPDTASLHSIKSRYPNISSLREFFNAKYQENSPSFKLAQRNFVESMAGYSLVCYFLQVKDRHNGNLLLDEEGHIIHIDFGFMLSNSPGGVNFESAPFKLTRELLEVMDSDAEGVPSEFFDYFKVLCIQGFLTCRKHAERIILLVEMLQDSDFPCFKGGARTIQNLRKRFHLSLTEEQCVSLVLSLISSSLDAWRTRQYDYYQRVLNGIL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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