Glyma08g16610 - SoyBase

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Report for Sequence Feature Glyma08g16610

Feature Type:	gene_model
Chromosome:	Gm08
Start:	12167255
stop:	12170886
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g16610

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
PTHR11601	Panther	CYSTEINE DESULFURYLASE	JGI		ISS
PTHR11601:SF13	Panther	NITROGEN FIXATION PROTEIN-RELATED	JGI		ISS
PF00266	PFAM	Aminotransferase class-V	JGI		ISS
UniRef100_G7LE12	UniRef	Annotation by Michelle Graham. Best UniRef hit: Cysteine desulfurase n=1 Tax=Medicago truncatula RepID=G7LE12_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_G7LE12	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cysteine desulfurase n=1 Tax=Medicago truncatula RepID=G7LE12_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g16610

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g16610

Paralog	Evidence	Comments
Glyma05g32450	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g16610 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g156300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g16610

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g16610

Limit To All Plant Sequences

>Glyma08g16610.2   sequence type=CDS   gene model=Glyma08g16610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGTACTAGAGCATCCCTTATTGGCAGAGATACCCGTATTAGCCGAACCATGCATGGATCAAAGCGTGGACAAAACCAACAACGAGGTTGGAGTGTTATCCAAAACAAGCATATCATCTCATGACTTTTGCAACCACTCTGAGTCCTTCAAGAAGCTCGTGGAGATGGGTTTGCCGTGTAATGAATCAGTTGAGGAAAAGCTGCATTGGTTGCGGTTACAAATCATAGGTAATGAAGCAGAGTTCGATTCCCCATTTGGAAAGCGAAAAGTTGTCTATGCTGATCACACTGCTTCAGGCCGCAGCCTTCACTACAATGAGAATTTCATCATCAAACACCTTCTTCCTTTCTATGGTAACACGCACACATGTGACAGTTATGTGGGAAGCAGGACAACAAAAATGGTACACGAAGCAAGTGAGTACATTAAAAAGTGTTTAGGTGGTGGAGAAGATGATGCACTTATATTATGTGGCTCGGGCACAACTGCAGCTATCAAGAGGCTTCAAGAAGTGATGGGAATCGCTGTGCCATCTGTTTTGAGGGAAAGGGTTTTGAAGAGCCTTAGCACAGAAGAAAGATGGGTGGTTTTTGTTGGACCTCATGAGCACCATTCAAACCTCCTTTCTTGGAGGCAAAGCTTGGCTATGGTGGTAGAGATTGGTCTTGATGATAAAGGGTTGCTTGATATGGATGCTCTAAAGCTACAACTTGAGGCCTACAAAGACACCAATCGACCCATGTTGGGATCTTTCTCAGCTTGTAGCAATGTCACGGGAATCTACTCAGATACACGAGCAATTGCTCAGCTTCTTCATCGGTACAAAGCCTTTGCATGCTTTGATTTCGCAGCAAGTGGTCCATATGTGGAGATTGACGTGAGGTCAGGGGAGAGTGATGGGTATGATGCAGTGTTCCTGAGTCCACATAAGTTTCTTGGTGGTCCTGACTCTCCTGGTGTGCTCCTCATGAACAAGGCCCTGTACCTGCTAGGATCTTCACCACCGTCCACTTGTGGAGGTGGAACCGTGACTTATGTCAATGCCTTCAATGAACAGGATACATTATACTTGGAGAACATAGAGGAAAGGGAAACTGGGGGGACGCCTCCAATAATCCAGACAGTGAGAGCAGCATTGGCATTTTGGGTGAAGGAATATATAAGCTATGAAGATATTGAAAAACGGGAACAACTGTACATTAACAAGGCACTCGAGAGACTTGGTTCAAACCCCAACATTGAGGTTCTAGGAAACTTAAAGGCCAAGAGACAAGCTATATTGTCATTTCTGATATACTCTACCACCACCAATTCTTGCTCAGCTGGTGAGTGGAGTGATGGTAACAAAGAAAATGAAGGGGAGCTTGATTTGTGGGCAGAAACGGGGAACCAAAGAGGTAAACCACTTCATGGTCCTTTTGTTGCAGCATTGCTCAATGACCTCTTTGGAATTCAAGCTCGAGGAGGGTGTGCTTGTGCTGGACCTTATGGACACGAATTGCTCCACATCAACAAGTCTCATTCACTTGCCATTAGATCAGCAGTTCAAGAGGGCTATATTGGAGTAAAGCCAGGGTGGACTCGAGTAAGTTTTCCATACTACATGAGTGAAGAGGATTTTGAGTACATTCTGAAAGCCATAGAGTTTATAGCTGTGTATGGCCAACGATTCATTCCTCTATATAGTTTCAATTTGATAAATGGCAGCTGGAGATTGAAGACACAGAAATTTGAGGCACAAACCAAGGAAGGCACTGACAAATTTGAGGTGGCTAAATGTGTTGCTAGTAGCCTCCGCAAATTCCCTTCTCAGGGTATACTCCAGGAGGAAGTGGATCCCAATATCTTCTGCTTTAGAATTTAA

Predicted protein sequences of Glyma08g16610

Limit To All Plant Sequences

>Glyma08g16610.2   sequence type=predicted peptide   gene model=Glyma08g16610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEVLEHPLLAEIPVLAEPCMDQSVDKTNNEVGVLSKTSISSHDFCNHSESFKKLVEMGLPCNESVEEKLHWLRLQIIGNEAEFDSPFGKRKVVYADHTASGRSLHYNENFIIKHLLPFYGNTHTCDSYVGSRTTKMVHEASEYIKKCLGGGEDDALILCGSGTTAAIKRLQEVMGIAVPSVLRERVLKSLSTEERWVVFVGPHEHHSNLLSWRQSLAMVVEIGLDDKGLLDMDALKLQLEAYKDTNRPMLGSFSACSNVTGIYSDTRAIAQLLHRYKAFACFDFAASGPYVEIDVRSGESDGYDAVFLSPHKFLGGPDSPGVLLMNKALYLLGSSPPSTCGGGTVTYVNAFNEQDTLYLENIEERETGGTPPIIQTVRAALAFWVKEYISYEDIEKREQLYINKALERLGSNPNIEVLGNLKAKRQAILSFLIYSTTTNSCSAGEWSDGNKENEGELDLWAETGNQRGKPLHGPFVAALLNDLFGIQARGGCACAGPYGHELLHINKSHSLAIRSAVQEGYIGVKPGWTRVSFPYYMSEEDFEYILKAIEFIAVYGQRFIPLYSFNLINGSWRLKTQKFEAQTKEGTDKFEVAKCVASSLRKFPSQGILQEEVDPNIFCFRI*

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