Glyma08g16600 - SoyBase

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Report for Sequence Feature Glyma08g16600

Feature Type:	gene_model
Chromosome:	Gm08
Start:	12160112
stop:	12161087
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g16600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G64620	AT	Annotation by Michelle Graham. TAIR10: cell wall / vacuolar inhibitor of fructosidase 2 \| chr5:25831875-25832417 FORWARD LENGTH=180	SoyBase	E_val: 5.00E-54	ISS
GO:0043086	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of catalytic activity	SoyBase	N/A	ISS
GO:0080167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to karrikin	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0004857	GO-mf	Annotation by Michelle Graham. GO Molecular Function: enzyme inhibitor activity	SoyBase	N/A	ISS
GO:0030599	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pectinesterase activity	SoyBase	N/A	ISS
GO:0046910	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pectinesterase inhibitor activity	SoyBase	N/A	ISS
PF04043	PFAM	Plant invertase/pectin methylesterase inhibitor	JGI		ISS
UniRef100_G7JBI0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pectinesterase inhibitor n=1 Tax=Medicago truncatula RepID=G7JBI0_MEDTR	SoyBase	E_val: 5.00E-68	ISS
UniRef100_I1KTN9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KTN9_SOYBN	SoyBase	E_val: 1.00E-128	ISS

Expression Patterns of Glyma08g16600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g16600

Paralog	Evidence	Comments
Glyma05g32440	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g16600 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma08g16600

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g16600

Limit To All Plant Sequences

>Glyma08g16600.1   sequence type=CDS   gene model=Glyma08g16600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTAAGATCTTCTATCTATTATCTCTCCTCTTGCTAGCACACCTTCTTCAGCCACACGTATTTGTTAAAGGAGATGGCAGTTTGATAGAGAAAACCTGCAAGAACACCAAGTACTACAATCTGTGTTTCTCCTCCCTGAAATCCAATCCAAGCAGCGCAAACGCGGACCCAAAGGGCTTGGCTGTGATCATGGTTGGGATTGGAATGGCCAATGCCACTTCCACTTCTCTCTATTTGTCTTCTAAGATGCTTGGCACTGCCAACAACAACGATTCCACCTTCAAAAGGGTGCTGAAGGAGTGTGCAGAAAAGTACAAGTATGCCAGTGATGCCCTCCAAGCTTCTGCTCAGGATTTGGTTAATGAGGCATATGACTATGCTTCCATGCACATCATTGCAGCCTATGATTACTCCAATGTTTGTCACAACTTGTTCAAACTCTACTCGGGTTTGGTTTATCCTTCTGAGCTTGCTCCTAGAGAGGATGGTTTGAAGTGTTTATGTGATGTTGCTTTGGGGATTGTTGAGAATCTTAATCGGTAG

Predicted protein sequences of Glyma08g16600

Limit To All Plant Sequences

>Glyma08g16600.1   sequence type=predicted peptide   gene model=Glyma08g16600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASKIFYLLSLLLLAHLLQPHVFVKGDGSLIEKTCKNTKYYNLCFSSLKSNPSSANADPKGLAVIMVGIGMANATSTSLYLSSKMLGTANNNDSTFKRVLKECAEKYKYASDALQASAQDLVNEAYDYASMHIIAAYDYSNVCHNLFKLYSGLVYPSELAPREDGLKCLCDVALGIVENLNR*

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