SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G64630 | AT | Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein | chr5:25833298-25836158 FORWARD LENGTH=487 | SoyBase | E_val: 0 | ISS |
| GO:0000724 | GO-bp | Annotation by Michelle Graham. GO Biological Process: double-strand break repair via homologous recombination | SoyBase | N/A | ISS |
| GO:0006310 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA recombination | SoyBase | N/A | ISS |
| GO:0006334 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleosome assembly | SoyBase | N/A | ISS |
| GO:0008283 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell proliferation | SoyBase | N/A | ISS |
| GO:0009555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen development | SoyBase | N/A | ISS |
| GO:0009933 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem structural organization | SoyBase | N/A | ISS |
| GO:0010026 | GO-bp | Annotation by Michelle Graham. GO Biological Process: trichome differentiation | SoyBase | N/A | ISS |
| GO:0031507 | GO-bp | Annotation by Michelle Graham. GO Biological Process: heterochromatin assembly | SoyBase | N/A | ISS |
| GO:0048366 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0033186 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: CAF-1 complex | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG1009 | KOG | Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) | JGI | ISS | |
| PTHR15271 | Panther | CHROMATIN ASSEMBLY FACTOR I SUBUNIT P60, (CAF-I 60 ) | JGI | ISS | |
| PF00400 | PFAM | WD domain, G-beta repeat | JGI | ISS | |
| UniRef100_I1KTN8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KTN8_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9FUF3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: FAS2 n=1 Tax=Glycine max RepID=Q9FUF3_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g16590 not represented in the dataset |
Glyma08g16590 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g32430 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g156200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g16590.1 sequence type=CDS gene model=Glyma08g16590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGGGTGGCACGGTTCAGATTAGCTGGCACGACGGCAAACCCGTCTTAACCCTCGATTTCCACCCTCACTCCGCCACTCTCGCCACCGCCGGCGCCGATTTCGACATCAAGTTTTGGCAAATAAAACCAGCGGGGTCACCGAAGAAGCTTCCCGTGGTTTCCTATCTTAGTAACCTCTCTTACCATAGCTCTGCAGTTAATGTTATTCGCTTCTCTTCTTCCGGGGAATTGCTAGCCTCTGGTGCTGATGGAGGGGACTTGATAATTTGGAAGCTGCATTCTACTGATGCTGGCCAGACATGGAAGGTTCTCAAGATGTTACGATCTCACCACAAGGACATTTTGGACCTGCAGTGGTCTACTGATGCCACGTATATCATTTCTGGATCAGTTGATAATTGTTGCATTATATGGGATGTTAACAAAGGAACTAACCTTCAGACGTTGGATACCCATGCACACTATGTTCAGGGGGTTGCATGGGACCCTCTAGGGAAATATGTTACTTCTCTTAGTTCTGATAGGACTTGCCGAATTTACATGAATAAGCCTCATAAATCAAAGGGCATTGAGAAAATCAATTATGTTTGTCAGCAAGTCATTTCCAAGGCAGATCAGCCATTATTTAAGAATTCTAAGGAGACAAAATTTCATCTCTTCCATGATGAGACGTTGCCATCTTTCTTCAGGAGATTAGCATGGTCTCCTGATGGTTCATTTCTACTTGTGCCCGCAGGCTCTTACAAAATTAGTACTGCATCTGAATCTGTGAATGCGGCTTACATATTTTCTAGAAAAGATCTTTCTAGGCCTGCTATACAACTTCCCTGTGCAAGCAAAGCTGTTGTAGCTGTCCGATTCTGCCCCATATTTTTTAAACTTCGGGGAACAAATTCAGCTGGGTTATTTAAATTCCCATATCGCATCATATTTGCTGTTGCCACTTTGAATTCATTGTACATTTATGACACTGAGAGCACCTCTCCGATAGCTGTATTAGCTGGCCTTCACTATGCCGCAATAACAGATATTACCTGGTCATCTGATGCTCATTATTTGGCATTGTCCTCACAAGATGGTTTCTGCTCTTTGGTGGAATTTGAAAATGACGAACTTGGATCACCTTACTCTTTATCAGAAGGAAAAGTCTCAAACAAGGATGGTAGGAGCACTGTACAGACAACCAATGACACTGTAACTGTACCAACTGGGAATGTTAGTGCAGTTCTAGCAGAGAGCAAGAAAATGGAATCAGAAGACACGGCTGATGACGTGGTCATTGAAGCCTCTGGCAATATTGGTGCTGTTGTAACAGAAAGTGGGAAAACTGTAACACAAGAGAAGGCTGGCATGATCCAGTCAACTGGGAATTTAGCAGATTTTAGGAAAAATGAAGCAGCAGGGAAAGCTGTTTACATGGTCATTGAGGCAACAGGGGATGTTGGAGGGGTTATAGCAGATAGTAGGAAAAATGAAGCAGAAGAGAAAACTGATGACATGGTCATTGAAACAACTGGAAGTATTGATGCAGCTGAATTAGATAGAAGAAAAGCTGAGCCAGAAGATAAGGCAGAGAAACAGCCAGCTAATCTAGATTCAGATGGTAAACAAGCGGAAGCAAAGGAGAAGACAAAGACTCTGCAATCAAGTTTAGACGGTATAAAATCAGGGGCAGAAGAAAAGGCAGGGCCACAATTGTTCAATCCGAAGAGTACACCCATATCAAATAAGCCAGCCAAGAAGCGTATTACTCCTACTGCCATTGATCCATGA
>Glyma08g16590.1 sequence type=predicted peptide gene model=Glyma08g16590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKGGTVQISWHDGKPVLTLDFHPHSATLATAGADFDIKFWQIKPAGSPKKLPVVSYLSNLSYHSSAVNVIRFSSSGELLASGADGGDLIIWKLHSTDAGQTWKVLKMLRSHHKDILDLQWSTDATYIISGSVDNCCIIWDVNKGTNLQTLDTHAHYVQGVAWDPLGKYVTSLSSDRTCRIYMNKPHKSKGIEKINYVCQQVISKADQPLFKNSKETKFHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKISTASESVNAAYIFSRKDLSRPAIQLPCASKAVVAVRFCPIFFKLRGTNSAGLFKFPYRIIFAVATLNSLYIYDTESTSPIAVLAGLHYAAITDITWSSDAHYLALSSQDGFCSLVEFENDELGSPYSLSEGKVSNKDGRSTVQTTNDTVTVPTGNVSAVLAESKKMESEDTADDVVIEASGNIGAVVTESGKTVTQEKAGMIQSTGNLADFRKNEAAGKAVYMVIEATGDVGGVIADSRKNEAEEKTDDMVIETTGSIDAAELDRRKAEPEDKAEKQPANLDSDGKQAEAKEKTKTLQSSLDGIKSGAEEKAGPQLFNPKSTPISNKPAKKRITPTAIDP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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