Glyma08g16570 - SoyBase

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Report for Sequence Feature Glyma08g16570

Feature Type:	gene_model
Chromosome:	Gm08
Start:	12141218
stop:	12143280
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g16570

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G00120	AT	Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein \| chr4:42601-43197 REVERSE LENGTH=198	SoyBase	E_val: 9.00E-46	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0010197	GO-bp	Annotation by Michelle Graham. GO Biological Process: polar nucleus fusion	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PTHR12565	Panther	STEROL REGULATORY ELEMENT-BINDING PROTEIN	JGI		ISS
PF00010	PFAM	Helix-loop-helix DNA-binding domain	JGI		ISS
UniRef100_G7LE06	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor HEC3 n=1 Tax=Medicago truncatula RepID=G7LE06_MEDTR	SoyBase	E_val: 6.00E-94	ISS
UniRef100_UPI000233A6C5	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A6C5 related cluster n=1 Tax=unknown RepID=UPI000233A6C5	SoyBase	E_val: 1.00E-162	ISS

Expression Patterns of Glyma08g16570

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g16570

Paralog	Evidence	Comments
Glyma05g32410	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g16570 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g156000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g16570

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g16570

Limit To All Plant Sequences

>Glyma08g16570.2   sequence type=CDS   gene model=Glyma08g16570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACACCAACACTAGTACATTATTCACAAATGTGAACAGCACTTGGAATCTTGAAAAGATGGAAACAAATGAACAACAACAACAACATGATGACCATAGTATTATTCTCCAAGTTCAAGACCCTATGGGTTCTGGGATTTGGCCCATCAACAACTACCAGAACCTTCTTCAAATGCATCAAACACCCAACACAACAACCTCATCCACGGTCATAGTACCACCCTCCTCCTCATCAGGGTTCCTTGGAGACATACTAGGTGTTCATCACAACCTAGAAGAAGATGAAGAGCCAGAAGAAGAGCTAGGAGCCATGAAGGAGATGATGTACAAGATCGCTGCTATGCAACCCGTGGACATCGACCCCGCCACGATTCGAAAACCAAAGAGAAGAAATGTTCGCATCAGTGATGACCCGCAGAGCGTGGCTGCACGCCACAGGAGAGAGAGGATCAGCGAGAAAATCCGAATCCTCCAAAGACTCGTTCCCGGTGGAACCAAAATGGACACTGCTTCAATGCTCGATGAAGCCATTCGATATGTTAAGTTCTTGAAGAGACAAATCAGGTTGCTTCAATCTATTCCTCAACCTTCACGTCAACCACCACAATGCATTGGTGTTGCCAGTACTACTCCTCATGCTAGTACCTTGTTGTTAGCCCCTTCTTCTGATTGGCCTTTTGCACCAAATGTGCTACCCCGTTCCACCGCCGTCAGCGCCTCCATGGACATGTCGGCTGGACTCGGATTCGACGGCCATGCTCATGCTTGTGATGGCTCCTCCAGCTTTAACCATCATGAGGTAATCAGTGAATAA

Predicted protein sequences of Glyma08g16570

Limit To All Plant Sequences

>Glyma08g16570.2   sequence type=predicted peptide   gene model=Glyma08g16570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDTNTSTLFTNVNSTWNLEKMETNEQQQQHDDHSIILQVQDPMGSGIWPINNYQNLLQMHQTPNTTTSSTVIVPPSSSSGFLGDILGVHHNLEEDEEPEEELGAMKEMMYKIAAMQPVDIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSIPQPSRQPPQCIGVASTTPHASTLLLAPSSDWPFAPNVLPRSTAVSASMDMSAGLGFDGHAHACDGSSSFNHHEVISE*

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