Glyma08g16520 - SoyBase

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Report for Sequence Feature Glyma08g16520

Feature Type:	gene_model
Chromosome:	Gm08
Start:	12101276
stop:	12104948
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g16520

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G38840	AT	Annotation by Michelle Graham. TAIR10: SAUR-like auxin-responsive protein family \| chr4:18125174-18125473 REVERSE LENGTH=99	SoyBase	E_val: 3.00E-31	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0042742	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF02519	PFAM	Auxin responsive protein	JGI		ISS
UniRef100_G7JL22	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Auxin-induced protein 6B n=1 Tax=Medicago truncatula RepID=G7JL22_MEDTR	SoyBase	E_val: 2.00E-43	ISS
UniRef100_I1KTN2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KTN2_SOYBN	SoyBase	E_val: 1.00E-59	ISS

Expression Patterns of Glyma08g16520

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g16520 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g155700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g16520

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g16520

Limit To All Plant Sequences

>Glyma08g16520.2   sequence type=transcript   gene model=Glyma08g16520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CATTAAACCTTTGCTTCTTGCACTGTAAGGTAATAATTTCATTTAAAAGACAAAAGTTATAAAAAGCATTGATTCTTTGATTTCTACAGATATAGGGTTATATATAGATAATAAGCTAAAGTGATACATCAATGGTATAAGAGAAAGCTTATGCTGGAGGAGTAGGCCAGTATTATTCAAGGGAAAATGCAAACCTTGATGATAAGTCCATTGTTATTTTGCACATGTCTTGGCACCTCAAAATTTTAACTTTGTCCCAAATAAATCTTTCTTATTGGTCCTAGGAAAAATACTTTAGCACTACCCTTGTTAAAATCACATGTTCTGTTCCTGCTTTTTATCTTATAAGAACAATGTCTAGCTCTTTTACAGCAATCAACCTTGCCCGTGCAGGGAGAATGGAACATTGTAATTTGTAACTAATAAACGGAAAAGACAGAGAAGATGGTTGAGCAATAGAATTCATTTTCATTAAAAAATAATAATGATATATTGTAATTTTGTACAAAACGTCACTTCTAATCTATGTCAACCTCCTAAAGTGTGAGATTTATTGTCCATTCAAACAAGTTATATGTTGGAAGACATCTTCACTGCATGGAATTGTGAGGCCGCCCATGGGATGATCATATCCAAACTCTTCCTCAGCTCGACTCAACAAATGAAGGTTGGTACAAGTATGACACAGGGATCATGAATCGCTTCATTTTCTCTCCAACATAAACTGCAAGGTAGCCCTTTGGTGCATCCACTGCTTTTGAAGATGCTTGGTTGGCTGCAAATATTGTCTTTCTGATACCAGAAGATGGGGTATGGTATGCTCCTCTATTTATCTTCCTAATCCTTGAAAGAGATCTCTAAGACAATACCATGTGATCCCTTGTTCTTCAGTGGACCCCATAATAGCCCTGCAAAAAATCATTCAGGGTGCAAGTGGATTGCAGTTGCAGACTGCCAATTAGCAACTATATATACACAAGAAACAGAAGTCAGTTGCATCCTGAAGCATCAGAATTAAAATATTTCTTTGAGTCAAGTCCTTTAGCATCAGTCAGTGTAAAAAAATGGGTTTCCGTATACCAGGTATTATTAGACAGGCATCATTTTCTACAGCCAAAGCAACTCACAAGGAACTTGAAGTCCCAAAAGGCTATCTTGCAGTCTATGTTGGAGATAAGATGAAGCGGTTTGTGATTCTGGTATCATACTTGAACCAACCTTCATTTCAAGAATTACTGAGTCAAGCAGAAGAAGAGTTTGGATATGATCATCCAACAGGCAGTCTCACAATTCCTTGCAAGGAGAATGAGTTTCTAAACCTCACTTCTCGCTTGACAATAGAAATCAATGGCTTTCCGCATATCAGGCATTATTAGACGAGCATCGTTTTCTTCAACCCAAGCAGCCTCCAAGGGGGTTGAAGTGCCGAAAGGCTATCTTGCAGTCTATGTTGGAGATAAGATGAAGCGGTTTGTGATTCCAGTATCATACTTGAACCAATCTTTATTTCATGAATTACTAAGTCAAGCAGAAGAACAATTTGGATATGATCATCCAACAGGCGGTCTCACAATTACATGTCAGGAGGATGAGTTCCTAAATGCCACTTCTTGCTTGAATGAGTTGTAAATCAAGCTAATGGAGACTGAGATTATAGATTAGATGAGGCAAATTTGTACAGAGGGCACTTTTATTGTAAAGAATCTTCATTTTGTTCTCTTTTATAACTCCACTGAAAGTTCAAACCTGTTGCGTGAATGAGATTGCAACACAAGACATTGTTTAAACACTTCTTTTGCTTTTGCCAAATCGAAATGCATGAATTCTAATATACACAACAGTACTATTATCAAATTTTAGTTGAT

Coding sequences of Glyma08g16520

Limit To All Plant Sequences

>Glyma08g16520.1   sequence type=CDS   gene model=Glyma08g16520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTTCCGCATATCAGGCATTATTAGACGAGCATCGTTTTCTTCAACCCAAGCAGCCTCCAAGGGGGTTGAAGTGCCGAAAGGCTATCTTGCAGTCTATGTTGGAGATAAGATGAAGCGGTTTGTGATTCCAGTATCATACTTGAACCAATCTTTATTTCATGAATTACTAAGTCAAGCAGAAGAACAATTTGGATATGATCATCCAACAGGCGGTCTCACAATTACATGTCAGGAGGATGAGTTCCTAAATGCCACTTCTTGCTTGAATGAGTTGTAA

>Glyma08g16520.2   sequence type=CDS   gene model=Glyma08g16520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTTCCGTATACCAGGTATTATTAGACAGGCATCATTTTCTACAGCCAAAGCAACTCACAAGGAACTTGAAGTCCCAAAAGGCTATCTTGCAGTCTATGTTGGAGATAAGATGAAGCGGTTTGTGATTCTGGTATCATACTTGAACCAACCTTCATTTCAAGAATTACTGAGTCAAGCAGAAGAAGAGTTTGGATATGATCATCCAACAGGCAGTCTCACAATTCCTTGCAAGGAGAATGAGTTTCTAAACCTCACTTCTCGCTTGACAATAGAAATCAATGGCTTTCCGCATATCAGGCATTATTAG

Predicted protein sequences of Glyma08g16520

Limit To All Plant Sequences

>Glyma08g16520.1   sequence type=predicted peptide   gene model=Glyma08g16520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFRISGIIRRASFSSTQAASKGVEVPKGYLAVYVGDKMKRFVIPVSYLNQSLFHELLSQAEEQFGYDHPTGGLTITCQEDEFLNATSCLNEL*

>Glyma08g16520.2   sequence type=predicted peptide   gene model=Glyma08g16520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGFRIPGIIRQASFSTAKATHKELEVPKGYLAVYVGDKMKRFVILVSYLNQPSFQELLSQAEEEFGYDHPTGSLTIPCKENEFLNLTSRLTIEINGFPHIRHY*

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