Report for Sequence Feature Glyma08g16390
Feature Type: gene_model
Chromosome: Gm08
Start: 11988550
stop: 11990947
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g16390
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G57670 AT
Annotation by Michelle Graham. TAIR10: C2H2-type zinc finger family protein | chr3:21370936-21373121 FORWARD LENGTH=383
SoyBase E_val: 9.00E-119 ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0009827 GO-bp
Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification
SoyBase N/A ISS
GO:0009860 GO-bp
Annotation by Michelle Graham. GO Biological Process: pollen tube growth
SoyBase N/A ISS
GO:0010500 GO-bp
Annotation by Michelle Graham. GO Biological Process: transmitting tissue development
SoyBase N/A ISS
GO:0005622 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: intracellular
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003676 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
PTHR10593 Panther
SERINE/THREONINE-PROTEIN KINASE RIO
JGI ISS
UniRef100_G7LDN1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger-like protein n=1 Tax=Medicago truncatula RepID=G7LDN1_MEDTR
SoyBase E_val: 2.00E-150 ISS
UniRef100_I1KTM1 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KTM1_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g16390
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma08g16390
Paralog Evidence Comments
Glyma15g42870 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g16390 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g154500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g16390
Coding sequences of Glyma08g16390
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g16390.1 sequence type=CDS gene model=Glyma08g16390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGACAGATCCTAAGTCCAATTTATACACTGAAACCTTCAACTTCATGCCCCTCTATTCTCACCTCTCTTCTTTTAGTACTTCTCAATCAAACTTATTCTCTTCTTACTCAAACAACAACACTTTCGCCATTCAATCTGAAACCTCTTCCTCTTATGCTCCTCCTTCTCCTCCTCTCAGAGAAGCCCTTCCTCTCATAAACAACATAAGCCTCAGAAAACAAAAGGAAAAAAATGAACCATCAAAGAGTGGTGGTGGTATGGTTGAAGAGGAAGGAGGAAAGAAAAGGGACATGGATGAGACGACCCTTTTGATGACTAGTACTACTACTGAAGAGGGTGATGCTGAAACTGTGACAGTAGCACTGCAAATAGGGCTTCCTAGCGTGGCTGCTTCTGATGATCTTAATGGGTCAAGGAAGATCCCTGCAGCTTGTGCACAAATGAATGAAAAGGAGGATGCGAGGAGTGTGATTTCTGGACACCCTTTTGATAGATTGAACAAGGTTCAGTATTGGATTCCCACCCCTTCTCAGATTCTCATTGGTCCTACTCAGTTTTTGTGTCATGTGTGCTCTAAGAGTTTCAACAGATATAATAATCTTCAGATGCATATGTGGGGACATGGATCTCAATATAGAAAGGGCCCTGATTCTCTAAAAGGAACACAACCATCAGCAATGCTACGGCTTCCATGCTTTTGTTGTGCACCAGGTTGCAAGCACAACATAGACCACCCAAGAGCAAGGCCTCTGAAGGACTTCAGAACCCTTCAAACACACTACAAGAGAAAACACGGCATTAAACCCTACATGTGCAGAAAATGTGACAAAACGTTTGCGGTGAAAGGTGATTGGAGGACACACGAGAAGAACTGTGGCAAAATATGGTACTGTTTATGTGGGTCTGATTTCAAACACAAAAGATCTCTAAAGGATCACATAAAGGCCTTTGGCCATGGCCACGGTGCTGTTGACATTGATTGCATGCAAGAAGATGAAGCGGCCTCCGAAATTGAACATGATGGGGATATCTCAATGTGA
Predicted protein sequences of Glyma08g16390
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g16390.1 sequence type=predicted peptide gene model=Glyma08g16390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MTDPKSNLYTETFNFMPLYSHLSSFSTSQSNLFSSYSNNNTFAIQSETSSSYAPPSPPLREALPLINNISLRKQKEKNEPSKSGGGMVEEEGGKKRDMDETTLLMTSTTTEEGDAETVTVALQIGLPSVAASDDLNGSRKIPAACAQMNEKEDARSVISGHPFDRLNKVQYWIPTPSQILIGPTQFLCHVCSKSFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPSAMLRLPCFCCAPGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCDKTFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGHGHGAVDIDCMQEDEAASEIEHDGDISM*