Glyma08g16380 - SoyBase

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Report for Sequence Feature Glyma08g16380

Feature Type:	gene_model
Chromosome:	Gm08
Start:	11979125
stop:	11984606
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g16380

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G66900	AT	Annotation by Michelle Graham. TAIR10: Disease resistance protein (CC-NBS-LRR class) family \| chr5:26714931-26717757 REVERSE LENGTH=809	SoyBase	E_val: 8.00E-81	ISS
GO:0006952	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0043531	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ADP binding	SoyBase	N/A	ISS
PTHR23155	Panther	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	JGI		ISS
PTHR23155:SF282	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00560	PFAM	Leucine Rich Repeat	JGI		ISS
PF00931	PFAM	NB-ARC domain	JGI		ISS
UniRef100_G7LFN2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Disease resistance protein n=1 Tax=Medicago truncatula RepID=G7LFN2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KTM0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1KTM0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g16380

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g16380 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g154400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g16380

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g16380

Limit To All Plant Sequences

>Glyma08g16380.2   sequence type=CDS   gene model=Glyma08g16380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACAATACATCGTCCCTTTGGTATTCCGGCAAACCCAGAATCCACTGTTGGCTTGGATACACCGTTGTGTAAGCTGTGTTGGGATGAACAAGTCAAGGGTAAATTCAGGGAAAATATTTTATTTGTCACCTTCTCAAAAACGCCCAACTTGAAGATTATTGTAGAGATATTATTTGAACACTATGGATATCAAGTGCCCGATTTTCAAAGTGATGAAGAAGCAGTTAAGCGATTGGGACTTTTGCTTAGGAAAATTGAGGGAAGTTCAATGTTGTTGTTCCTGGATGATGTTTGGCCTGTCTCAGAAGCCCTTGTCAAGAAATTTCAAGTCCTGATACTAGATTCTAAAATTTTGGTAACTACTAGGGTTGGATTTCCTAGATTAGGCACTCAGTGTATCTTAAAACCACTCGTTCATGATGATGCAATAACCCTTTTCCGGCATTATGCGTCATTGGAAGAAAGCTGTTCTAGTATTTCTGAAGAAGTCATCCAAAAGGTTGTGAAAAACTGCAAGGGTTTACCACTTTCCATCAAAGTGATTGGGAGCTCACTCTATAATTCTGTCAAGGAGTGCTTCAGGGACCTAGGGTTATTTCCTGAAGACCAAAGAATTCCTTTTACTTCTCTTATTGATATGTGGGCAGAGTTGTATGGACTAGATGATGATGGCATAGAGGCAATGTCCATCATCAACAAATTAGACTCCATGAATCTGGCTAATGTCTCGGTAGAAAGTGACACAGACAATTACTTCTACAATAACCTCTTCATCGAACCAATTGAACGGAGAAAAAGATTGATTATTGAGATAAATCAAAATAAACCTGAGTGTTGGCTTGGGGAGAAGTCAAAATTGCTTGGCTGGCGTGTTAAACAGAAGCCCCAACATGCCACTGACCACACATTGTCTATATCAACTGATGAAAATTGTACTTCAGATTGGCCCCTAATGATGCAACTGGCTCAAGTTGAGTGGATTTTTGTTCCTTCCTTTGTTGCAATGAAGAATCTTAAAAAGTTATCCCTCTACACGTGTAATATGAAGCAGGCATTTGAAAACAATCACATGCTAATTCCAAACGCTTTTCCGAATCTTGAAGAGTTAAACATTGACCATTGCAAAGATATGGTGGCATTGCCTAAGGGGCTCTGTGATATCACCTCCTTGAAGAAGCTCAGCATTACTAATTGCCACAAACTCTCTGCACTGCCGCAAGAAATTGGAAATTTGATGAATTTGGAACTCCTAAGCCTCAGTTGCTGTACTGATTTGGAAGGTATACCAGCTTCTATTGGAAGGCTTTCAAATCTACGACTTATGGACATCTCAAATTGCATAAGCCTTCCTAGTTTACCGGAGGACTTTGGTAATCTGTCTAGTCTGCAAAATCTCTACATGAGAAGCTGTGCAAGGTGTGAATTACCATTCTCAGTTGCTAATCTTGAGAATTTAAAGGTGGTGATAGGCGATGAAGAGACAGCTGCTTCATGCGAAGATTTCAAGCCTATGCTTCCCAATCTAAAGGTAGATGTTCCTTAA

Predicted protein sequences of Glyma08g16380

Limit To All Plant Sequences

>Glyma08g16380.2   sequence type=predicted peptide   gene model=Glyma08g16380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TIHRPFGIPANPESTVGLDTPLCKLCWDEQVKGKFRENILFVTFSKTPNLKIIVEILFEHYGYQVPDFQSDEEAVKRLGLLLRKIEGSSMLLFLDDVWPVSEALVKKFQVLILDSKILVTTRVGFPRLGTQCILKPLVHDDAITLFRHYASLEESCSSISEEVIQKVVKNCKGLPLSIKVIGSSLYNSVKECFRDLGLFPEDQRIPFTSLIDMWAELYGLDDDGIEAMSIINKLDSMNLANVSVESDTDNYFYNNLFIEPIERRKRLIIEINQNKPECWLGEKSKLLGWRVKQKPQHATDHTLSISTDENCTSDWPLMMQLAQVEWIFVPSFVAMKNLKKLSLYTCNMKQAFENNHMLIPNAFPNLEELNIDHCKDMVALPKGLCDITSLKKLSITNCHKLSALPQEIGNLMNLELLSLSCCTDLEGIPASIGRLSNLRLMDISNCISLPSLPEDFGNLSSLQNLYMRSCARCELPFSVANLENLKVVIGDEETAASCEDFKPMLPNLKVDVP*

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