Glyma08g16270 - SoyBase

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Report for Sequence Feature Glyma08g16270

Feature Type:	gene_model
Chromosome:	Gm08
Start:	11897890
stop:	11899087
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g16270

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G12630	AT	Annotation by Michelle Graham. TAIR10: A20/AN1-like zinc finger family protein \| chr3:4012707-4013189 FORWARD LENGTH=160	SoyBase	E_val: 7.00E-58	ISS
GO:0006007	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucose catabolic process	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0016567	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein ubiquitination	SoyBase	N/A	ISS
GO:0051865	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein autoubiquitination	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG3173	KOG	Predicted Zn-finger protein	JGI		ISS
PTHR10634	Panther	PRK1-ASSOCIATED ZINC FINGER PROTEIN	JGI		ISS
PF01428	PFAM	AN1-like Zinc finger	JGI		ISS
PF01754	PFAM	A20-like zinc finger	JGI		ISS
UniRef100_E0A2W1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AN1-like transcription factor n=1 Tax=Glycine max RepID=E0A2W1_SOYBN	SoyBase	E_val: 8.00E-116	ISS
UniRef100_E0A2W1	UniRef	Annotation by Michelle Graham. Best UniRef hit: AN1-like transcription factor n=1 Tax=Glycine max RepID=E0A2W1_SOYBN	SoyBase	E_val: 8.00E-116	ISS

Expression Patterns of Glyma08g16270

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g16270

Paralog	Evidence	Comments
Glyma15g42740	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g16270 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g153200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g16270

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g16270

Limit To All Plant Sequences

>Glyma08g16270.1   sequence type=CDS   gene model=Glyma08g16270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCAGAAAACCGAGAAAGAAGAAACCGACTTCAAGGTTCCCGAAACGATTACGCTTTGCGTTAACAACTGCGGCGTCACCGGAAACCCTGCTACGAATAACATGTGTCAGAAGTGCTTCACCGCCTTCACCACCTCTACCGCCACCACGTCCGGCGCCGGAGGTGCCGGAATAGCTTCTCCGGCTACCAGATCCGGCATCTCCGCGCGTCCACTGAAGAGATCTTTTCCCGAGGAGCCCTCGCCGCCGGCGGATCCTCCGTCTTCAGACCAGACGACCCCGTCGGAGGCGAAGCGCGTGGTGAACCGCTGCTCCGGCTGCAGGAGGAAGGTCGGACTCACCGGATTTCGGTGCCGATGCGGCGAGCTCTTCTGCGCCGAGCACCGGTACTCCGACCGCCACGACTGCAGCTACGACTACAAAGCCGCCGGAAGAGAAGCCATCGCGAGGGAGAATCCGGTGATTAGAGCCGCGAAGATCGTCAAAGTCTGA

Predicted protein sequences of Glyma08g16270

Limit To All Plant Sequences

>Glyma08g16270.1   sequence type=predicted peptide   gene model=Glyma08g16270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAQKTEKEETDFKVPETITLCVNNCGVTGNPATNNMCQKCFTAFTTSTATTSGAGGAGIASPATRSGISARPLKRSFPEEPSPPADPPSSDQTTPSEAKRVVNRCSGCRRKVGLTGFRCRCGELFCAEHRYSDRHDCSYDYKAAGREAIARENPVIRAAKIVKV*

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