Glyma08g16220 - SoyBase

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Report for Sequence Feature Glyma08g16220

Feature Type:	gene_model
Chromosome:	Gm08
Start:	11843653
stop:	11845418
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g16220

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G20820	AT	Annotation by Michelle Graham. TAIR10: Leucine-rich repeat (LRR) family protein \| chr3:7280930-7282027 FORWARD LENGTH=365	SoyBase	E_val: 4.00E-154	ISS
GO:0006952	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
KOG4579	KOG	Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF645	Panther		JGI		ISS
PTHR24420:SF701	Panther		JGI		ISS
PF00560	PFAM	Leucine Rich Repeat	JGI		ISS
PF08263	PFAM	Leucine rich repeat N-terminal domain	JGI		ISS
UniRef100_C6ZRY8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Leucine rich repeat protein n=1 Tax=Glycine max RepID=C6ZRY8_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_C6ZRY8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Leucine rich repeat protein n=1 Tax=Glycine max RepID=C6ZRY8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g16220

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g16220 not represented in the dataset	Glyma08g16220 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g16220 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g152800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g16220

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g16220

Limit To All Plant Sequences

>Glyma08g16220.2   sequence type=transcript   gene model=Glyma08g16220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTGGCACTCGTTCCTCTTATTAGCGACGGCCATTCTCGCCGTTGTGTGCTCCGCCGTGAGCGGTTGCTCGCCATCGGATAGGGCGGCGCTGCTGGCCTTCCGGAAGGCGCTGAGCGAGCCCTACCTTGGCCTCTTCAACTCGTGGACGGGCTCCAACTGCTGCCTCGACTGGTACGGCATCAGCTGCGACGCCACCACCGGCCGCTCCGAAGACCCCATCTTCGAGAAAGCCGGTCGCTCCGGCTACATGACCGGAAAACTCTCAGAGGCGATCTGCGGCATCGACACCCTCACCACCCTCGTCGTCGCTGATTGGAAAGACATTGCCGGGGAGATCCCCACCTGCGTCACCGCGCTTCCCTCCCTCCGCATCCTCGACCTCATAGGGAACAAGCTCTCCGGCGAGATCCCGGCCGACGTGGGGAAACTCTCACGTCTAACCGTCCTGAACCTGGCCGACAACGCCCTAAGCGGCAAAATTCCAGCGTCCATCACCCAGCTGGGCTCACTCAAACACCTGGACCTCAGCAATAATCAGCTCTGCGGCGAGATTCCGGAAGACTTCGGGAATCTGGGCATGCTGAGCCGCATGTTGCTGAGCCGGAACCAGCTAACCGGTAAAATACCAGTTTCTGTCTCCAAGATTTACCGGCTTGCGGACTTAGACTTATCCGCAAACCGGTTATCCGGTTCTGTCCCGTTCGAACTCGGGACAATGCCGGTTCTATCCACACTGAATTTGGATAGTAACTCTTTAGAGGGCTTAATTCCTTCGAGTTTGTTGAGTAATGGGGGTATGGGCATTTTGAACCTTAGTCGAAACGGGTTTGAAGGCTCCATACCCGATGTGTTCGGGTCACACTCGTATTTCATGGCTTTGGATTTGTCTTTCAATAATTTAAAGGGTCGGGTACCCTCTTCGTTGGCTTCGGCTAAGTTTATCGGGCATTTGGATCTTAGCCATAACCATTTGTGTGGATCCATTCCTCTCGGAGCACCCTTCGATCACCTCGAAGCGTCGTCGTTTACTAGCAATGATTGCTTGTGTGGGAACCCCTTGAAGACTTGCTAG

Coding sequences of Glyma08g16220

Limit To All Plant Sequences

>Glyma08g16220.1   sequence type=CDS   gene model=Glyma08g16220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCGGAAAACTCTCAGAGGCGATCTGCGGCATCGACACCCTCACCACCCTCGTCGTCGCTGATTGGAAAGACATTGCCGGGGAGATCCCCACCTGCGTCACCGCGCTTCCCTCCCTCCGCATCCTCGACCTCATAGGGAACAAGCTCTCCGGCGAGATCCCGGCCGACGTGGGGAAACTCTCACGTCTAACCGTCCTGAACCTGGCCGACAACGCCCTAAGCGGCAAAATTCCAGCGTCCATCACCCAGCTGGGCTCACTCAAACACCTGGACCTCAGCAATAATCAGCTCTGCGGCGAGATTCCGGAAGACTTCGGGAATCTGGGCATGCTGAGCCGCATGTTGCTGAGCCGGAACCAGCTAACCGGTAAAATACCAGTTTCTGTCTCCAAGATTTACCGGCTTGCGGACTTAGACTTATCCGCAAACCGGTTATCCGGTTCTGTCCCGTTCGAACTCGGGACAATGCCGGTTCTATCCACACTGAATTTGGATAGTAACTCTTTAGAGGGCTTAATTCCTTCGAGTTTGTTGAGTAATGGGGGTATGGGCATTTTGAACCTTAGTCGAAACGGGTTTGAAGGCTCCATACCCGATGTGTTCGGGTCACACTCGTATTTCATGGCTTTGGATTTGTCTTTCAATAATTTAAAGGGTCGGGTACCCTCTTCGTTGGCTTCGGCTAAGTTTATCGGGCATTTGGATCTTAGCCATAACCATTTGTGTGGATCCATTCCTCTCGGAGCACCCTTCGATCACCTCGAAGCGTCGTCGTTTACTAGCAATGATTGCTTGTGTGGGAACCCCTTGAAGACTTGCTAG

>Glyma08g16220.2   sequence type=CDS   gene model=Glyma08g16220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTGGCACTCGTTCCTCTTATTAGCGACGGCCATTCTCGCCGTTGTGTGCTCCGCCGTGAGCGGTTGCTCGCCATCGGATAGGGCGGCGCTGCTGGCCTTCCGGAAGGCGCTGAGCGAGCCCTACCTTGGCCTCTTCAACTCGTGGACGGGCTCCAACTGCTGCCTCGACTGGTACGGCATCAGCTGCGACGCCACCACCGGCCGCTCCGAAGACCCCATCTTCGAGAAAGCCGGTCGCTCCGGCTACATGACCGGAAAACTCTCAGAGGCGATCTGCGGCATCGACACCCTCACCACCCTCGTCGTCGCTGATTGGAAAGACATTGCCGGGGAGATCCCCACCTGCGTCACCGCGCTTCCCTCCCTCCGCATCCTCGACCTCATAGGGAACAAGCTCTCCGGCGAGATCCCGGCCGACGTGGGGAAACTCTCACGTCTAACCGTCCTGAACCTGGCCGACAACGCCCTAAGCGGCAAAATTCCAGCGTCCATCACCCAGCTGGGCTCACTCAAACACCTGGACCTCAGCAATAATCAGCTCTGCGGCGAGATTCCGGAAGACTTCGGGAATCTGGGCATGCTGAGCCGCATGTTGCTGAGCCGGAACCAGCTAACCGGTAAAATACCAGTTTCTGTCTCCAAGATTTACCGGCTTGCGGACTTAGACTTATCCGCAAACCGGTTATCCGGTTCTGTCCCGTTCGAACTCGGGACAATGCCGGTTCTATCCACACTGAATTTGGATAGTAACTCTTTAGAGGGCTTAATTCCTTCGAGTTTGTTGAGTAATGGGGGTATGGGCATTTTGAACCTTAGTCGAAACGGGTTTGAAGGCTCCATACCCGATGTGTTCGGGTCACACTCGTATTTCATGGCTTTGGATTTGTCTTTCAATAATTTAAAGGGTCGGGTACCCTCTTCGTTGGCTTCGGCTAAGTTTATCGGGCATTTGGATCTTAGCCATAACCATTTGTGTGGATCCATTCCTCTCGGAGCACCCTTCGATCACCTCGAAGCGTCGTCGTTTACTAGCAATGATTGCTTGTGTGGGAACCCCTTGAAGACTTGCTAG

Predicted protein sequences of Glyma08g16220

Limit To All Plant Sequences

>Glyma08g16220.1   sequence type=predicted peptide   gene model=Glyma08g16220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTGKLSEAICGIDTLTTLVVADWKDIAGEIPTCVTALPSLRILDLIGNKLSGEIPADVGKLSRLTVLNLADNALSGKIPASITQLGSLKHLDLSNNQLCGEIPEDFGNLGMLSRMLLSRNQLTGKIPVSVSKIYRLADLDLSANRLSGSVPFELGTMPVLSTLNLDSNSLEGLIPSSLLSNGGMGILNLSRNGFEGSIPDVFGSHSYFMALDLSFNNLKGRVPSSLASAKFIGHLDLSHNHLCGSIPLGAPFDHLEASSFTSNDCLCGNPLKTC*

>Glyma08g16220.2   sequence type=predicted peptide   gene model=Glyma08g16220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAWHSFLLLATAILAVVCSAVSGCSPSDRAALLAFRKALSEPYLGLFNSWTGSNCCLDWYGISCDATTGRSEDPIFEKAGRSGYMTGKLSEAICGIDTLTTLVVADWKDIAGEIPTCVTALPSLRILDLIGNKLSGEIPADVGKLSRLTVLNLADNALSGKIPASITQLGSLKHLDLSNNQLCGEIPEDFGNLGMLSRMLLSRNQLTGKIPVSVSKIYRLADLDLSANRLSGSVPFELGTMPVLSTLNLDSNSLEGLIPSSLLSNGGMGILNLSRNGFEGSIPDVFGSHSYFMALDLSFNNLKGRVPSSLASAKFIGHLDLSHNHLCGSIPLGAPFDHLEASSFTSNDCLCGNPLKTC*

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