SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G26880 | AT | Annotation by Michelle Graham. TAIR10: AGAMOUS-like 26 | chr5:9457950-9459190 REVERSE LENGTH=263 | SoyBase | E_val: 3.00E-114 | ISS |
| GO:0006396 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA processing | SoyBase | N/A | ISS |
| GO:0006995 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to nitrogen starvation | SoyBase | N/A | ISS |
| GO:0016114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: terpenoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| GO:0008173 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA methyltransferase activity | SoyBase | N/A | ISS |
| GO:0046983 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity | SoyBase | N/A | ISS |
| PTHR12029 | Panther | RNA METHYLASE | JGI | ISS | |
| PTHR12029:SF26 | Panther | JGI | ISS | ||
| PF00588 | PFAM | SpoU rRNA Methylase family | JGI | ISS | |
| UniRef100_C6TCU8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TCU8_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_G7IWJ3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: tRNA/rRNA methyltransferase, putative n=1 Tax=Medicago truncatula RepID=G7IWJ3_MEDTR | SoyBase | E_val: 3.00E-138 | ISS |
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Glyma08g16210 not represented in the dataset |
Glyma08g16210 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g152700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g16210.1 sequence type=CDS gene model=Glyma08g16210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACATCACTGCCTTCAAATCCCTCAACATTCCATTTCCAACCTTTCCATCAAAATTTTCTCCTTTTCGTCCATTCAGTTTCTTTCACTTCAAACCTTTTCGCACTCCTTCCTCACCTCGCTTCATCTCCCATTGCTCTCTCAATGGGTCAGCAGAGATAACAAGCAAGGAAGGTACTTTGCCTCGTGGCGTTGGAGAGGCAGTGAATGAAGCGTCAAGTTCCAAGATTCTTCAGGTTGTGCTCGTGTCCCCTCAGATTCCAGGAAACACTGGGTGCATTGCTAGAACTTGCGCAGCATCAGCTGTTGGATTACACTTAGTTGGGCCATTAGGATTTCAGGTGGATGATACTAAACTAAAGCGTGCTGGGTTGGATTACTGGCCATATGTGGTTGTTAAAATTCATGATTCTTGGGAAGATTTTCATAATTATTTTAGGCAACAGGAGGGTGAAAAACGGTTGCTAGCATTTACAAAGAGAGGAACAAAAATTCATTCTGAGTTTTCCTACAGAAAAGGTGATTATCTAATATTCGGCTCTGAAACTAGTGGCCTGCCTCCTGAAGCCTTGCTAGACTGCAAAACAGAACCATTTGGTGGTGGAACTATCAAGATTCCAATGGTTGAGACTTATGTCAGATGTTTGAATCTATCTGTAAGTGTTGGCATAGCTTTGTATGAAGCTTCTAGACAACTAAACTATGAGTCACTTCAGGTACCTTCAGAAAGCTGTATTGATACTACTGAGGAATCATTTATTGCTGAAGACATTTTTGCTTGA
>Glyma08g16210.1 sequence type=predicted peptide gene model=Glyma08g16210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDITAFKSLNIPFPTFPSKFSPFRPFSFFHFKPFRTPSSPRFISHCSLNGSAEITSKEGTLPRGVGEAVNEASSSKILQVVLVSPQIPGNTGCIARTCAASAVGLHLVGPLGFQVDDTKLKRAGLDYWPYVVVKIHDSWEDFHNYFRQQEGEKRLLAFTKRGTKIHSEFSYRKGDYLIFGSETSGLPPEALLDCKTEPFGGGTIKIPMVETYVRCLNLSVSVGIALYEASRQLNYESLQVPSESCIDTTEESFIAEDIFA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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