Glyma08g16200 - SoyBase

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Report for Sequence Feature Glyma08g16200

Feature Type:	gene_model
Chromosome:	Gm08
Start:	11821868
stop:	11829027
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g16200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G52120	AT	Annotation by Michelle Graham. TAIR10: SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein \| chr3:19329243-19331738 FORWARD LENGTH=443	SoyBase	E_val: 0	ISS
GO:0006396	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA processing	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
PTHR23340	Panther	ARGININE/SERINE RICH SPLICING FACTOR SF4/14	JGI		ISS
PF01585	PFAM	G-patch domain	JGI		ISS
PF01805	PFAM	Surp module	JGI		ISS
UniRef100_G7LDP5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Splicing factor 4-like protein n=1 Tax=Medicago truncatula RepID=G7LDP5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KTK9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KTK9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g16200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g16200

Paralog	Evidence	Comments
Glyma15g42690	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g16200 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g152600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g16200

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g16200

Limit To All Plant Sequences

>Glyma08g16200.1   sequence type=CDS   gene model=Glyma08g16200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACAAGGGGGTGCCACCTAGCCTCTTCGTCAATGACGGTTCTTTCATGGAGAGGTTCAAGCAACTTCAGCAAGAGCAGGAGAAAGGGAAGAATGTCAAATTGGAGGATTCTAAACCAATTAAGGTTAATTCAGGGTCTTTGTCTCCCAATCACTCCATTACCAAAACGCCCGTGGACTTGAAGGTTAATGACACAAGAAAAACATCTCAGGGTGGTTCCAGTGGCAAGCTAGCTTTCAGTTTAAAACAAAAGTCAAAGCTGGTGCCACCCCCTGTTAAGTTAAGTGCTGATGAGGATGAAGAAACTGAAGCTGGGTATGTTTCAAATGATGCACCACTAAAACGGCAAAAGTTAGGCCAGGAGGAAGGCATTGACCAATCATCAAGACAACTTGATGTTGCACCTCATTCCCCAAGTGATCCTACAGTGAAGAAAGTTGCTGACAAACTGGCAAGTTTTGTGGCTAAAAATGGAAGGCAATTTGAGGATGTAACACGCCAAAAAAATCCTGGGGATACACCTTTCAAATTTTTGTTTGATGAGAGATGTGCTGAATACAAGTATTATGAATATCGGCTTGCTCAAGAAGAAGATGCTCTTGGGCAATCAAGGGAATCACAGGTGCCTCGTAACGGGGGTACAAGCACTTCATCTTCCAAACAGGCTAGTGGTCATCAGAGATCATCTCAGCAGCATACATACCAAATTCCTGCATCTGCTTTATATGAAAGTCCTGACAATCCAAGAGCTTCTGGATTTTCAATTCAAACATCACCAGTAGGAAGCAGTGAAGAGCCCAGTGGTTCATCAAATGCTGATTCTTTGGCGCTAATGGAGTTCTACATGAAAAAAGCTGCACGGGAGGAGAAGTATAAACAACCTAAGCATTCAAAAGATGAGATGCCCCCTCCTGCTTCTCTTCTAGGCAAAAAAGGCCATCACATGGGTGATTTCATTCCTCCAGAAGAACTCGAGAAGTTCTTGGCTACCTGTAATGATGCTGCAGCGCAGAAAGCTGCTAGGGAGGCTGCAGAGAGGGCTAAGATTCAGGCTGATAATGTAGGCCACCGGCTCCTGTCAAAAATGGGTTGGAAAGAAGGTGAGGGTTTGGGTGGATCCAGGAAGGGTATTGCGGATCCTATCATGGCTGGTAATGTTAAGAAGAATAACTTGGGGGTTGGTGCTCAGGAACCTGGGGAGGTGAGTGCAGAGGATGACATATACGAGCAGTACAAAAAGCGGATGATGCTTGGCTACCGTTACCGACCCAATCCCCTGAACAATCCCCGCAAGGCTTATTACTGA

Predicted protein sequences of Glyma08g16200

Limit To All Plant Sequences

>Glyma08g16200.1   sequence type=predicted peptide   gene model=Glyma08g16200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDKGVPPSLFVNDGSFMERFKQLQQEQEKGKNVKLEDSKPIKVNSGSLSPNHSITKTPVDLKVNDTRKTSQGGSSGKLAFSLKQKSKLVPPPVKLSADEDEETEAGYVSNDAPLKRQKLGQEEGIDQSSRQLDVAPHSPSDPTVKKVADKLASFVAKNGRQFEDVTRQKNPGDTPFKFLFDERCAEYKYYEYRLAQEEDALGQSRESQVPRNGGTSTSSSKQASGHQRSSQQHTYQIPASALYESPDNPRASGFSIQTSPVGSSEEPSGSSNADSLALMEFYMKKAAREEKYKQPKHSKDEMPPPASLLGKKGHHMGDFIPPEELEKFLATCNDAAAQKAAREAAERAKIQADNVGHRLLSKMGWKEGEGLGGSRKGIADPIMAGNVKKNNLGVGAQEPGEVSAEDDIYEQYKKRMMLGYRYRPNPLNNPRKAYY*

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