Report for Sequence Feature Glyma08g16190
Feature Type: gene_model
Chromosome: Gm08
Start: 11809099
stop: 11812372
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g16190
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G42280 AT
Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr2:17611428-17613163 REVERSE LENGTH=359
SoyBase E_val: 9.00E-51 ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0046685 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to arsenic-containing substance
SoyBase N/A ISS
GO:0048573 GO-bp
Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003677 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA binding
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
PTHR10985 Panther
BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED
JGI ISS
PTHR10985:SF42 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF00010 PFAM
Helix-loop-helix DNA-binding domain
JGI ISS
UniRef100_G7IWI2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: DNA binding protein n=1 Tax=Medicago truncatula RepID=G7IWI2_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1KTK8 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KTK8_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g16190
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma08g16190
Paralog Evidence Comments
Glyma15g42680 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g16190 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g152500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g16190
Coding sequences of Glyma08g16190
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g16190.1 sequence type=CDS gene model=Glyma08g16190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGTGTTATGTATAGTCCTGTTCTCAATTACTCAGATGTGGAGCATCAGCTAAGGAAAAACCAAGACATGGATTCAAGTATTGGACATCCACAACAACACTGTCACCAACCCAATTCTGGACTATTGAGGTATTGTTCTGCTCCAAGCTCATTGCTGGCAAGCCTCATTGACAACACCATTCATGGCTGTGTCAACGAGGAATCGTTCACAAGTGAGAATCATCATCATCAGCAGCAGCAGCAGCAGCAGCATTATCTTCCATCTACAAGTTCAGAAATGGAGACCATGTTATCCAAATTGCTACCATCCAACAATGGATGGAGCAATTCAGAAGCTTTGCAAGAATTTGGAGGCAAGCCTGTGAAGCAGGAAATAGGGGAATCTATTCCACAAGAGCCACCACAACAGAATGGTTATTCTTATGGTGGCTCTCAGTTGATTTACCAATCTCAGCAAATTCAAGGCTTGCCAAATGGTGGATCTTCCAGTGCTTCTGGCAGTGCTTTTGATGGCTCTTTTGGTGTGGTGCACTCCATGGCTTCAGAGGACTCCATTCAATCTAAAATGGGTATCAGGAATTGCTCCAATCTCTTTAGGCAAAAGAGTTCCCCTGCTGCATTTTTCTCCATTGAAAATGATCTTGCAGCATTGAGAGAAGTAGGAAGCTTTAAAGCCGATGATGTTTCAAATGGACTAGTTACTGCATCAACTGGTGGGTTGCATAGTTCTCATACTTTCTCATCTAGGCCATCTTCATGCTTGAAACGGTTGCCACAAATAGCCGAAAATGGAAATGAAAGCCTAGAAGAAAATTGTGACCAAAGTAGAAACCTAGTAAATGACAATGGTAGCTCAAAATGTTACATACCTAGCTTCACCAATGAATTATGGGAAAGTTCTGCATTCAATGCCCCAAAAACAGAGAATGAAGATGAAATCATGTTTTCCACTTCAAATATTTTGGAATCTCAGGAAGCAGATTTCAGCTTTCAAAATCTGGGTTTGACTCACCATTTGAGTCTACCTAGCTCTTCTACTAAGATGTCATCCATAGAAAAGTTTCTTCAGATTCAAGGTTCTGTTCCTTGTAAAATTCGAGCCAAAAGAGGCTTTGCCACTCACCCAAGAAGTATTGCAGAGAGGGTAAGAAGAACAAGAATTAGTGAAAGAATCAAGAAACTGCAAGACCTTTTTCCAAAATCAGAAAAGCAAACAAGCACAGCAGATATGTTAGATTTGGCAGTTGAGTATATTAAGGACCTGCAGCAAAAAGTTAAGATACTCTCAGATTGTAAGGCAAAGTGCAAATGTACAAGTAATGAGAAGCATTACACTAGAACTTGTGCTTGA
Predicted protein sequences of Glyma08g16190
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g16190.1 sequence type=predicted peptide gene model=Glyma08g16190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSVMYSPVLNYSDVEHQLRKNQDMDSSIGHPQQHCHQPNSGLLRYCSAPSSLLASLIDNTIHGCVNEESFTSENHHHQQQQQQQHYLPSTSSEMETMLSKLLPSNNGWSNSEALQEFGGKPVKQEIGESIPQEPPQQNGYSYGGSQLIYQSQQIQGLPNGGSSSASGSAFDGSFGVVHSMASEDSIQSKMGIRNCSNLFRQKSSPAAFFSIENDLAALREVGSFKADDVSNGLVTASTGGLHSSHTFSSRPSSCLKRLPQIAENGNESLEENCDQSRNLVNDNGSSKCYIPSFTNELWESSAFNAPKTENEDEIMFSTSNILESQEADFSFQNLGLTHHLSLPSSSTKMSSIEKFLQIQGSVPCKIRAKRGFATHPRSIAERVRRTRISERIKKLQDLFPKSEKQTSTADMLDLAVEYIKDLQQKVKILSDCKAKCKCTSNEKHYTRTCA*