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Report for Sequence Feature Glyma08g16170

Feature Type:gene_model
Chromosome:Gm08
Start:11786773
stop:11787726
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g16170
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G42850AT Annotation by Michelle Graham. TAIR10: Thioredoxin superfamily protein | chr5:17182072-17182568 REVERSE LENGTH=134 SoyBaseE_val: 6.00E-39ISS
GO:0045454GO-bp Annotation by Michelle Graham. GO Biological Process: cell redox homeostasis SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
PTHR12452Panther 42-9-9 PROTEIN-RELATED JGI ISS
PF06110PFAM Eukaryotic protein of unknown function (DUF953) JGI ISS
UniRef100_G7J1S6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Thioredoxin domain-containing protein n=1 Tax=Medicago truncatula RepID=G7J1S6_MEDTR SoyBaseE_val: 6.00E-55ISS
UniRef100_UPI00023380F7UniRef Annotation by Michelle Graham. Best UniRef hit: UPI00023380F7 related cluster n=1 Tax=unknown RepID=UPI00023380F7 SoyBaseE_val: 8.00E-68ISS

Expression Patterns of Glyma08g16170
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g16170 not represented in the dataset
Glyma08g16170 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g16170 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g152300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g16170
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g16170
>Glyma08g16170.2   sequence type=CDS   gene model=Glyma08g16170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTTTGAAGGTGTTAGATGCGACAGTGTCGAGCTTTGATGGGGTTTTTGACAACTGGTGCCCTGATTGTGTGAGAGCTGAACCTGTGATCTACAAGAAGCTGGAGGCTTCACCTGATGACATTGCACTTTTGAGAGCTTATGTTGGAGATAGACCAACATGGAGGAATCCCCAGCATCCATGGAGGATGGATCCCAGGTTCAAGCTCACTGGGGTGCCAACCTTGATCCGTTGGGAGAACAACACCGTCAAAGGTCACTTGGAGGATCATGAAGCTCACATTGAAAGCAAAATTGAAGCTCTTGTTGCTGACAAGTGA
Predicted protein sequences of Glyma08g16170
>Glyma08g16170.2   sequence type=predicted peptide   gene model=Glyma08g16170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPLKVLDATVSSFDGVFDNWCPDCVRAEPVIYKKLEASPDDIALLRAYVGDRPTWRNPQHPWRMDPRFKLTGVPTLIRWENNTVKGHLEDHEAHIESKIEALVADK*






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