Glyma08g16150 - SoyBase

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Report for Sequence Feature Glyma08g16150

Feature Type:	gene_model
Chromosome:	Gm08
Start:	11763649
stop:	11771598
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g16150

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G48030	AT	Annotation by Michelle Graham. TAIR10: gametophytic factor 2 \| chr5:19466298-19469753 REVERSE LENGTH=456	SoyBase	E_val: 0	ISS
GO:0000740	GO-bp	Annotation by Michelle Graham. GO Biological Process: nuclear membrane fusion	SoyBase	N/A	ISS
GO:0000741	GO-bp	Annotation by Michelle Graham. GO Biological Process: karyogamy	SoyBase	N/A	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0009553	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo sac development	SoyBase	N/A	ISS
GO:0009558	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo sac cellularization	SoyBase	N/A	ISS
GO:0009560	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation	SoyBase	N/A	ISS
GO:0010197	GO-bp	Annotation by Michelle Graham. GO Biological Process: polar nucleus fusion	SoyBase	N/A	ISS
GO:0010198	GO-bp	Annotation by Michelle Graham. GO Biological Process: synergid death	SoyBase	N/A	ISS
GO:0051085	GO-bp	Annotation by Michelle Graham. GO Biological Process: chaperone mediated protein folding requiring cofactor	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0031072	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding	SoyBase	N/A	ISS
GO:0051082	GO-mf	Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding	SoyBase	N/A	ISS
KOG0715	KOG	Molecular chaperone (DnaJ superfamily)	JGI		ISS
PTHR24076	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24076:SF80	Panther		JGI		ISS
PF00226	PFAM	DnaJ domain	JGI		ISS
PF00684	PFAM	DnaJ central domain (4 repeats)	JGI		ISS
PF01556	PFAM	DnaJ C terminal region	JGI		ISS
UniRef100_I1MJL8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chaperone protein DnaJ 19 n=1 Tax=Glycine max RepID=I1MJL8_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_UPI0002338A0A	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338A0A related cluster n=1 Tax=unknown RepID=UPI0002338A0A	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g16150

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g16150 not represented in the dataset	Glyma08g16150 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g16150

Paralog	Evidence	Comments
Glyma15g42640	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g16150 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g152100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g16150

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g16150

Limit To All Plant Sequences

>Glyma08g16150.2   sequence type=transcript   gene model=Glyma08g16150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCTCCCCTTTTACGTCCGTTGCAACGCAACTGGAACCTTCCAATTGCTATTAGGGTTTTTGGAAGGGGTTTTAGGGCATTTTTTCGCAACCAGAAAACCCCCAATTCTCTTTCCAAGGCTTCGTCAATTCTCCTTCCAAAGCTTCCAAATGCTTCGCTCCAATGGCTTTAGGCTCCTTCGATCGCTGCCCGAAAAACTCCTCCGCCACGCCAACGAACCCATATATGATGGAGTGTGCCAAAGGGGTTATAGGACATTGAGTTCTGGTCTTTGTAATCCATCCAGAGTTATTGGGAATTTTTCTCCAAATGTTGGAAATGGTGTTAATTTGAAGAACTTGTTGCTTTTTGGAGCCGCGGATACATATTGGGGGACATCTAGATCCGTTCATGGGTCAGCATCATTGGCAAGGGACTATTACGAAGTGCTTGGTGTGAGTAAGAATGCTAGTTCTTCTGAAATAAAGAAAGCATACTATGGGCTTGCAAAGAAGCTCCATCCAGACACAAACAAAGATGATCCTAAGGCTGAAAAGAAGTTTCAAGAAGTTTCAATGGCATATGAGGTTTTGAAGGATGAGGAAAAACGTCAACAGTATGATCAGGTTGGCCATGATGTGTATGTAAACCAAGAAAGCACCAGTGGTTTTGGAGGCAACAGTGGCTTTAATCCATTTGAGCAGATGTTCCGTGATCATGATTTTGTCAAGAACTTTTTTCATCAGAATATTGGTGGAGAGGATGTCAAGACTTTCATTGAACTATCTTTTATGGAAGCTGTCCGGGGATGCAACAAAACTATTACATTTGAAACAGAAGTGCTTTGTAACACCTGTGGTGGGAGTGGTGTGCCTCCTGGTACAAGACCTGAAACCTGTAGGCGCTGTAAAGGGTCAGGAGTGACATTTGTACAAACTGGCATATTTAGGATGGAGAGTACTTGTGGTACATGTAAGGGAACTGGCAAAATTGTATCGAATTTCTGCAAGTCATGCAAAGGTACAAAGGTTATCAAAGGAACGAAATCTGTCAAATTGGATATTATGGCTGGGATTGACAACAATGAAACTATAAAGGTTTATAGAAGTGGTGGTGCAGATCCTGATGGAGATAATCCTGGTGATCTTTATGTTACCATCAAGGTCAGGGAAGATCCTGTCTTCCGTAGAGAAGGATCTAATATTCATGTAGATGCTGTCTTAAGTATCACTCAGGCTATTTTGGGCGGAACCATTCAGGTCCCAACTCTTACTGGAGATGTTGTTCTTAAGATTCGTCCTGGCACCCAACCTGGTCAGAAGGTGGTTCTGAAAAAGAAAGGGATCAAGACTAAAAATTCTTACACATTTGGGGATCAATATGTTCATTTTAACGTCAGCATTCCAAACAATCTGACAGAGAGACAGCGGGAATTGATTGAAGAGTTTGCCAAGGAAGAGCAAGGAGATTTTGATAAACAGAGAGTTGCATCTGCTTCTGGTTGAAAACATTGCAAGAGTTATTATCAAAATCATATGCTCAACTAGGCGGTTGTTGAAGTTTTGTAGGATTAAGGATTGGTAATTCTTTTCTTAATTCCTTCCACTTTTTCGAGTGTATGTAATATTTATTTCTCGTCCCAAGGGATGATCACAATTCAAAATTTTTTTGTTAGAACTTAGAAGGCAATCCCCTCATGCTCCTCTAGGCTAGAATTCTAGTCAGTGCTGTATATAGTTTCCTTATAACATAAGAAAGGGCGCAAGTCACTCAATGTGATTCTTTTTCCTACTATCACGTCACATAAAGGAGGAGCCTTTATCATTGGACCATGGGTAAACTAGAATATAATTTCTGCATAGTGTCAACATGAAACTATATATATATTCATCTGTCTATTGATCAGTGCTATTTGTTCTCTTATTATGCCAGTGATGATTAAAAAATTGTGATTCGGTCCACATGGGCAATTTATGATAACTTATCAAATTTAACATT

>Glyma08g16150.3   sequence type=transcript   gene model=Glyma08g16150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAATATATTTTTCACCTACCTTTTTTATGATTTTCTTTTTCAGAATATATTCTCTTGTAATATTTTAATGTCTGCACAAGTTGTGTTTGTGAACATATTCCATGCAGCTTGCAAAGAAGCTCCATCCAGACACAAACAAAGATGATCCTAAGGCTGAAAAGAAGTTTCAAGAAGTTTCAATGGCATATGAGGTTTTGAAGGATGAGGAAAAACGTCAACAGTATGATCAGGTTGGCCATGATGTGTATGTAAACCAAGAAAGCACCAGTGGTTTTGGAGGCAACAGTGGCTTTAATCCATTTGAGCAGATGTTCCGTGATCATGATTTTGTCAAGAACTTTTTTCATCAGAATATTGGTGGAGAGGATGTCAAGACTTTCATTGAACTATCTTTTATGGAAGCTGTCCGGGGATGCAACAAAACTATTACATTTGAAACAGAAGTGCTTTGTAACACCTGTGGTGGGAGTGGTGTGCCTCCTGGTACAAGACCTGAAACCTGTAGGCGCTGTAAAGGGTCAGGAGTGACATTTGTACAAACTGGCATATTTAGGATGGAGAGTACTTGTGGTACATGTAAGGGAACTGGCAAAATTGTATCGAATTTCTGCAAGTCATGCAAAGGTACAAAGGTTATCAAAGGAACGAAATCTGTCAAATTGGATATTATGGCTGGGATTGACAACAATGAAACTATAAAGGTTTATAGAAGTGGTGGTGCAGATCCTGATGGAGATAATCCTGGTGATCTTTATGTTACCATCAAGGTCAGGGAAGATCCTGTCTTCCGTAGAGAAGGATCTAATATTCATGTAGATGCTGTCTTAAGTATCACTCAGGCTATTTTGGGCGGAACCATTCAGGTCCCAACTCTTACTGGAGATGTTGTTCTTAAGATTCGTCCTGGCACCCAACCTGGTCAGAAGGTGGTTCTGAAAAAGAAAGGGATCAAGACTAAAAATTCTTACACATTTGGGGATCAATATGTTCATTTTAACGTCAGCATTCCAAACAATCTGACAGAGAGACAGCGGGAATTGATTGAAGAGTTTGCCAAGGAAGAGCAAGGAGATTTTGATAAACAGAGAGTTGCATCTGCTTCTGGTTGAAAACATTGCAAGAGTTATTATCAAAATCATATGCTCAACTAGGCGGTTGTTGAAGTTTTGTAGGATTAAGGATTGGTAATTCTTTTCTTAATTCCTTCCACTTTTTCGAGTGTATGTAATATTTATTTCTCGTCCCAAGGGATGATCACAATTCAAAATTTTTTTGTTAGAACTTAGAAGGCAATCCCCTCATGCTCCTCTAGGCTAGAATTCTAGTCAGTGCTGTATATAGTTTCCTTATAACATAAGAAAGGGCGCAAGTCACTCAATGTGATTCTTTTTCCTACTATCACGTCACATAAAGGAGGAGCCTTTATCATTGGACCATGGGTAAACTAGAATATAATTTCTGCATAGTGTCAACATGAAACTATATATATATTCATCTGTCTATTGATCAGTGCTATTTGTTCTCTTATTATGCCAGTGATGATTAAAAAATTGTGATTCGGTCCACATGGGCAATTTATGATAACTTATCAAATTTAACATT

Coding sequences of Glyma08g16150

Limit To All Plant Sequences

>Glyma08g16150.1   sequence type=CDS   gene model=Glyma08g16150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTCGCTCCAATGGCTTTAGGCTCCTTCGATCGCTGCCCGAAAAACTCCTCCGCCACGCCAACGAACCCATATATGATGGAGTGTGCCAAAGGGGTTATAGGACATTGAGTTCTGGTCTTTGTAATCCATCCAGAGTTATTGGGAATTTTTCTCCAAATGTTGGAAATGGTGTTAATTTGAAGAACTTGTTGCTTTTTGGAGCCGCGGATACATATTGGGGGACATCTAGATCCGTTCATGGGTCAGCATCATTGGCAAGGGACTATTACGAAGTGCTTGGTGTGAGTAAGAATGCTAGTTCTTCTGAAATAAAGAAAGCATACTATGGGCTTGCAAAGAAGCTCCATCCAGACACAAACAAAGATGATCCTAAGGCTGAAAAGAAGTTTCAAGAAGTTTCAATGGCATATGAGGTTTTGAAGGATGAGGAAAAACGTCAACAGTATGATCAGGTTGGCCATGATGTGTATGTAAACCAAGAAAGCACCAGTGGTTTTGGAGGCAACAGTGGCTTTAATCCATTTGAGCAGATGTTCCGTGATCATGATTTTGTCAAGAACTTTTTTCATCAGAATATTGGTGGAGAGGATGTCAAGACTTTCATTGAACTATCTTTTATGGAAGCTGTCCGGGGATGCAACAAAACTATTACATTTGAAACAGAAGTGCTTTGTAACACCTGTGGTGGGAGTGGTGTGCCTCCTGGTACAAGACCTGAAACCTGTAGGCGCTGTAAAGGGTCAGGAGTGACATTTGTACAAACTGGCATATTTAGGATGGAGAGTACTTGTGGTACATGTAAGGGAACTGGCAAAATTGTATCGAATTTCTGCAAGTCATGCAAAGGTACAAAGGTTATCAAAGGAACGAAATCTGTCAAATTGGATATTATGGCTGGGATTGACAACAATGAAACTATAAAGGTTTATAGAAGTGGTGGTGCAGATCCTGATGGAGATAATCCTGGTGATCTTTATGTTACCATCAAGGTCAGGGAAGATCCTGTCTTCCGTAGAGAAGGATCTAATATTCATGTAGATGCTGTCTTAAGTATCACTCAGGTAATGTTCCTTAATGAAAAAGTTTTGAGCCTATGCCTGGTTGTTTATTTCAGGTATCTATTAACTTATGTGTGCATTTTGTTAGTATTAGTTTATAATTCTGGGGATGCAAATTGGTGGCATGGCCTAGATAGAGAAAATGTTGGGACCATGTGGGGCATGTGTTTTTTGTATATTTGCTGTCAATTTGAAATCATGTGA

>Glyma08g16150.2   sequence type=CDS   gene model=Glyma08g16150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTCGCTCCAATGGCTTTAGGCTCCTTCGATCGCTGCCCGAAAAACTCCTCCGCCACGCCAACGAACCCATATATGATGGAGTGTGCCAAAGGGGTTATAGGACATTGAGTTCTGGTCTTTGTAATCCATCCAGAGTTATTGGGAATTTTTCTCCAAATGTTGGAAATGGTGTTAATTTGAAGAACTTGTTGCTTTTTGGAGCCGCGGATACATATTGGGGGACATCTAGATCCGTTCATGGGTCAGCATCATTGGCAAGGGACTATTACGAAGTGCTTGGTGTGAGTAAGAATGCTAGTTCTTCTGAAATAAAGAAAGCATACTATGGGCTTGCAAAGAAGCTCCATCCAGACACAAACAAAGATGATCCTAAGGCTGAAAAGAAGTTTCAAGAAGTTTCAATGGCATATGAGGTTTTGAAGGATGAGGAAAAACGTCAACAGTATGATCAGGTTGGCCATGATGTGTATGTAAACCAAGAAAGCACCAGTGGTTTTGGAGGCAACAGTGGCTTTAATCCATTTGAGCAGATGTTCCGTGATCATGATTTTGTCAAGAACTTTTTTCATCAGAATATTGGTGGAGAGGATGTCAAGACTTTCATTGAACTATCTTTTATGGAAGCTGTCCGGGGATGCAACAAAACTATTACATTTGAAACAGAAGTGCTTTGTAACACCTGTGGTGGGAGTGGTGTGCCTCCTGGTACAAGACCTGAAACCTGTAGGCGCTGTAAAGGGTCAGGAGTGACATTTGTACAAACTGGCATATTTAGGATGGAGAGTACTTGTGGTACATGTAAGGGAACTGGCAAAATTGTATCGAATTTCTGCAAGTCATGCAAAGGTACAAAGGTTATCAAAGGAACGAAATCTGTCAAATTGGATATTATGGCTGGGATTGACAACAATGAAACTATAAAGGTTTATAGAAGTGGTGGTGCAGATCCTGATGGAGATAATCCTGGTGATCTTTATGTTACCATCAAGGTCAGGGAAGATCCTGTCTTCCGTAGAGAAGGATCTAATATTCATGTAGATGCTGTCTTAAGTATCACTCAGGCTATTTTGGGCGGAACCATTCAGGTCCCAACTCTTACTGGAGATGTTGTTCTTAAGATTCGTCCTGGCACCCAACCTGGTCAGAAGGTGGTTCTGAAAAAGAAAGGGATCAAGACTAAAAATTCTTACACATTTGGGGATCAATATGTTCATTTTAACGTCAGCATTCCAAACAATCTGACAGAGAGACAGCGGGAATTGATTGAAGAGTTTGCCAAGGAAGAGCAAGGAGATTTTGATAAACAGAGAGTTGCATCTGCTTCTGGTTGA

>Glyma08g16150.3   sequence type=CDS   gene model=Glyma08g16150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGCTTGCAAAGAAGCTCCATCCAGACACAAACAAAGATGATCCTAAGGCTGAAAAGAAGTTTCAAGAAGTTTCAATGGCATATGAGGTTTTGAAGGATGAGGAAAAACGTCAACAGTATGATCAGGTTGGCCATGATGTGTATGTAAACCAAGAAAGCACCAGTGGTTTTGGAGGCAACAGTGGCTTTAATCCATTTGAGCAGATGTTCCGTGATCATGATTTTGTCAAGAACTTTTTTCATCAGAATATTGGTGGAGAGGATGTCAAGACTTTCATTGAACTATCTTTTATGGAAGCTGTCCGGGGATGCAACAAAACTATTACATTTGAAACAGAAGTGCTTTGTAACACCTGTGGTGGGAGTGGTGTGCCTCCTGGTACAAGACCTGAAACCTGTAGGCGCTGTAAAGGGTCAGGAGTGACATTTGTACAAACTGGCATATTTAGGATGGAGAGTACTTGTGGTACATGTAAGGGAACTGGCAAAATTGTATCGAATTTCTGCAAGTCATGCAAAGGTACAAAGGTTATCAAAGGAACGAAATCTGTCAAATTGGATATTATGGCTGGGATTGACAACAATGAAACTATAAAGGTTTATAGAAGTGGTGGTGCAGATCCTGATGGAGATAATCCTGGTGATCTTTATGTTACCATCAAGGTCAGGGAAGATCCTGTCTTCCGTAGAGAAGGATCTAATATTCATGTAGATGCTGTCTTAAGTATCACTCAGGCTATTTTGGGCGGAACCATTCAGGTCCCAACTCTTACTGGAGATGTTGTTCTTAAGATTCGTCCTGGCACCCAACCTGGTCAGAAGGTGGTTCTGAAAAAGAAAGGGATCAAGACTAAAAATTCTTACACATTTGGGGATCAATATGTTCATTTTAACGTCAGCATTCCAAACAATCTGACAGAGAGACAGCGGGAATTGATTGAAGAGTTTGCCAAGGAAGAGCAAGGAGATTTTGATAAACAGAGAGTTGCATCTGCTTCTGGTTGA

Predicted protein sequences of Glyma08g16150

Limit To All Plant Sequences

>Glyma08g16150.1   sequence type=predicted peptide   gene model=Glyma08g16150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLRSNGFRLLRSLPEKLLRHANEPIYDGVCQRGYRTLSSGLCNPSRVIGNFSPNVGNGVNLKNLLLFGAADTYWGTSRSVHGSASLARDYYEVLGVSKNASSSEIKKAYYGLAKKLHPDTNKDDPKAEKKFQEVSMAYEVLKDEEKRQQYDQVGHDVYVNQESTSGFGGNSGFNPFEQMFRDHDFVKNFFHQNIGGEDVKTFIELSFMEAVRGCNKTITFETEVLCNTCGGSGVPPGTRPETCRRCKGSGVTFVQTGIFRMESTCGTCKGTGKIVSNFCKSCKGTKVIKGTKSVKLDIMAGIDNNETIKVYRSGGADPDGDNPGDLYVTIKVREDPVFRREGSNIHVDAVLSITQVMFLNEKVLSLCLVVYFRYLLTYVCILLVLVYNSGDANWWHGLDRENVGTMWGMCFLYICCQFEIM*

>Glyma08g16150.2   sequence type=predicted peptide   gene model=Glyma08g16150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLRSNGFRLLRSLPEKLLRHANEPIYDGVCQRGYRTLSSGLCNPSRVIGNFSPNVGNGVNLKNLLLFGAADTYWGTSRSVHGSASLARDYYEVLGVSKNASSSEIKKAYYGLAKKLHPDTNKDDPKAEKKFQEVSMAYEVLKDEEKRQQYDQVGHDVYVNQESTSGFGGNSGFNPFEQMFRDHDFVKNFFHQNIGGEDVKTFIELSFMEAVRGCNKTITFETEVLCNTCGGSGVPPGTRPETCRRCKGSGVTFVQTGIFRMESTCGTCKGTGKIVSNFCKSCKGTKVIKGTKSVKLDIMAGIDNNETIKVYRSGGADPDGDNPGDLYVTIKVREDPVFRREGSNIHVDAVLSITQAILGGTIQVPTLTGDVVLKIRPGTQPGQKVVLKKKGIKTKNSYTFGDQYVHFNVSIPNNLTERQRELIEEFAKEEQGDFDKQRVASASG*

>Glyma08g16150.3   sequence type=predicted peptide   gene model=Glyma08g16150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQLAKKLHPDTNKDDPKAEKKFQEVSMAYEVLKDEEKRQQYDQVGHDVYVNQESTSGFGGNSGFNPFEQMFRDHDFVKNFFHQNIGGEDVKTFIELSFMEAVRGCNKTITFETEVLCNTCGGSGVPPGTRPETCRRCKGSGVTFVQTGIFRMESTCGTCKGTGKIVSNFCKSCKGTKVIKGTKSVKLDIMAGIDNNETIKVYRSGGADPDGDNPGDLYVTIKVREDPVFRREGSNIHVDAVLSITQAILGGTIQVPTLTGDVVLKIRPGTQPGQKVVLKKKGIKTKNSYTFGDQYVHFNVSIPNNLTERQRELIEEFAKEEQGDFDKQRVASASG*

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