Glyma08g16140 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g16140

Feature Type:	gene_model
Chromosome:	Gm08
Start:	11753788
stop:	11756223
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g16140

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G48060	AT	Annotation by Michelle Graham. TAIR10: C2 calcium/lipid-binding plant phosphoribosyltransferase family protein \| chr5:19475296-19478878 FORWARD LENGTH=1036	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG1028	KOG	Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis	JGI		ISS
PTHR10024	Panther	SYNAPTOTAGMIN	JGI		ISS
PTHR10024:SF97	Panther	C2 DOMAIN-CONTAINING PROTEIN	JGI		ISS
PF00168	PFAM	C2 domain	JGI		ISS
PF08372	PFAM	Plant phosphoribosyltransferase C-terminal	JGI		ISS
UniRef100_G7J1T2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glutathione peroxidase n=1 Tax=Medicago truncatula RepID=G7J1T2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KTK3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1KTK3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g16140

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g16140

Paralog	Evidence	Comments
Glyma15g42630	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g16140 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g152000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g16140

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g16140

Limit To All Plant Sequences

>Glyma08g16140.1   sequence type=CDS   gene model=Glyma08g16140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTTCAATAAAGAGAAGACAAAGAGGTGCTCCAGTCACAATGCACCCAGTTGGTCCTCAAGTCCATCCTAGTAGCCATGATGAAGACTACAATCTGAGGGAGACCGATCCACAGCTTGGTGGGGAGCGGTGGCCTAATGCCACAAGAGGGTGGATGAGTGGTGGTGAAAGATTCTCAAGCACACATGACCTTGTTGAGCAGATGTTCTATCTGTATGTTAGGGTGGTGAAAGCCAAAGATCTTTCCCCCAGCACTCTCACCTCAAGCTGTGATCCTTATGTGGAAGTGAAGCTGGGGAACTACAAAGGAAGAACAAAGCACATAGAGAAGAAAACCAACCCGGAATGGAACCAAGTCTATGCTTTCTCCAAAGACAGATTTCAATCTTCTGTTTTGGAAGTCATTGTGAAAGACAGAGAAATGCTGGGAAGAGATGATTATATTGGAAGGGTGGCATTTGATCTCAATGAGGTTCCAACCAGAGTTCCCCCAGACAGTCCACTGGCTCCTCAGTGGTACAGACTCGAGGACCGGCGAGGAGAAGGGAAGGTGAGGGGTGATATCATGCTTGCAGTGTGGATGGGAACTCAAGCTGATGAAGCCTTCTCAGAGGCATGGCATTCTGATGCTGCCACTGTGTATGGAGAGGGTGTTTTCAATGTCAGATCAAAGGTTTATGTGTCACCAAAACTGTGGTATCTAAGGGTGAATGTCATTGAAGCACAAGATGTGATACCAAGTGACAGAAACCGGCTGCCAGAGGTTTTTGTCAAGGCTCAGATGGGGAGCCAAGTGTTGAGGACCAAGATATGTCCAAGTAGAACAACCACACCACTTTGGAATGAAGATTTGGTATTTGTGGCAGCTGAACCATTTGAGGAGCAGTTGACAATCACTGTGGAGGATCGAGTGAACCCTTCAAGAGATGAAGTACTTGGTAAGATAATCTTGCCACTGACCCTCTTTGAGAAGCAGCTAGACCACCGGCCAGTTCATTCGCGCTGGTTCAATCTTCAGAAGTTTGGTTTTGGAATGATGGAAGCTGATAGGAGAAATGAGCTCAAGTTTTCAAGCAGGATTCACCTAAGAATTTCCCTTGAAGGTGGATACCATGTCCTTGATGAGTCCACTTTGTACTCCAGTGACCAAAGACCAACAGCTAGACAGCTATGGAAGCAGCCTATTGGGGTGCTTGAAGTAGGCATCTTAGGAGCAAAAGGACTCCTCCCAATGAAGATGAGGGATGGCCGTGGCACCCTGGATGCATACTGTGTTGCCAAGTATGGCCAGAAATGGGTCAGAACCAGAACAATTCTTGACACTTTTAGTCCAAAATGGAATGAGCAATACACATGGGAGGTTTATGATCCTTGCACTGTTATAACACTTGGTGTCTTTGACAACTGCCATTTAGGTGGAGGGGAAAAAGCCACTGCTGGCACTGCAGCCAGGGATTCAAGAATTGGAAAGGTAAGAATTAGGCTCTCAACACTTGAAGCTCATAGGATATACACTCATAGTTATCCACTTCTTGTTTTGCACCCTCATGGTGTCAAGAAAATGGGTGAGCTTCAGCTAGCAGTGAGGTTCACTAGCCTCTCACTGGCTAACATGGTTTACATTTATGGCCAACCCTTGCTTCCAAAGCTGCATTACTTTCGCCCTTTCACCGTTAACCTAGTAGAGAGTTTGAGGTACCAAGCCATGAACATTGTAGCTGTTAGGCTTGGAAGAGCTGAACCTCCCCTCAGGAAGGAGGTAGTAGAGTACATGTTAGATGTTGATTCCCATATGTGGAGCATGAGAAGAAGCAAAGCCAACTTCTTCCGAATCATGTCACTTTTCTCTGGATTCATCACAATGGGGCAATGGTTTACCCAAGTTTGCCATTGGAAGAACCCCATCACATCAATCCTAGTTAACATTCTCTTCCTAATACTCATTTGCTACCCTGAATTGATACTTCCAACCTTGTTCCTCTACATGTTCTTGATTGGCCTGTGGAACTATAGGTTTAGGCCTAGACACCCACCCCACATGGACACAAAACTCTCATGGGCAGAAGTTGTTCAACCCGATGAACTCGATGAAGAGTTCGATACATTCCCAACTTCTAGACCACATGATGTGGTGAGAATGAGGTATGACAGACTTAGAAGTGTGGCAGGAAGGATTCAAACAGTTGTTGGGGACATAGCAACACAGGGAGAGAGGTTTCAGTCTCTACTGAGTTGGAGAGACACAAGAGCAACCAGCCTCTTTGTAGTGTTCAGCTTTTGTTCTGCTGTGGTTCTCTATGCAACACCACCAAAAGTGGTGGCTATGGTAGCAGGCTTGTACTATCTGCGGCACCCAAAGTTTCGCAGCAAGCTTCCTTCTGTGCCAAGCAACTTCTTCAAGAGGCTTCCAGCTAGAACAGATAGCATGCTGTGA

Predicted protein sequences of Glyma08g16140

Limit To All Plant Sequences

>Glyma08g16140.1   sequence type=predicted peptide   gene model=Glyma08g16140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MISIKRRQRGAPVTMHPVGPQVHPSSHDEDYNLRETDPQLGGERWPNATRGWMSGGERFSSTHDLVEQMFYLYVRVVKAKDLSPSTLTSSCDPYVEVKLGNYKGRTKHIEKKTNPEWNQVYAFSKDRFQSSVLEVIVKDREMLGRDDYIGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGDIMLAVWMGTQADEAFSEAWHSDAATVYGEGVFNVRSKVYVSPKLWYLRVNVIEAQDVIPSDRNRLPEVFVKAQMGSQVLRTKICPSRTTTPLWNEDLVFVAAEPFEEQLTITVEDRVNPSRDEVLGKIILPLTLFEKQLDHRPVHSRWFNLQKFGFGMMEADRRNELKFSSRIHLRISLEGGYHVLDESTLYSSDQRPTARQLWKQPIGVLEVGILGAKGLLPMKMRDGRGTLDAYCVAKYGQKWVRTRTILDTFSPKWNEQYTWEVYDPCTVITLGVFDNCHLGGGEKATAGTAARDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAVRFTSLSLANMVYIYGQPLLPKLHYFRPFTVNLVESLRYQAMNIVAVRLGRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIMSLFSGFITMGQWFTQVCHWKNPITSILVNILFLILICYPELILPTLFLYMFLIGLWNYRFRPRHPPHMDTKLSWAEVVQPDELDEEFDTFPTSRPHDVVRMRYDRLRSVAGRIQTVVGDIATQGERFQSLLSWRDTRATSLFVVFSFCSAVVLYATPPKVVAMVAGLYYLRHPKFRSKLPSVPSNFFKRLPARTDSML*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain