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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G59550 | AT | Annotation by Michelle Graham. TAIR10: Rad21/Rec8-like family protein | chr3:21997262-22000496 FORWARD LENGTH=693 | SoyBase | E_val: 7.00E-96 | ISS |
| GO:0000087 | GO-bp | Annotation by Michelle Graham. GO Biological Process: M phase of mitotic cell cycle | SoyBase | N/A | ISS |
| GO:0000280 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nuclear division | SoyBase | N/A | ISS |
| GO:0000911 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation | SoyBase | N/A | ISS |
| GO:0006261 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication | SoyBase | N/A | ISS |
| GO:0006275 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of DNA replication | SoyBase | N/A | ISS |
| GO:0009555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen development | SoyBase | N/A | ISS |
| GO:0009561 | GO-bp | Annotation by Michelle Graham. GO Biological Process: megagametogenesis | SoyBase | N/A | ISS |
| GO:0010389 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of G2/M transition of mitotic cell cycle | SoyBase | N/A | ISS |
| GO:0042023 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication | SoyBase | N/A | ISS |
| GO:0051225 | GO-bp | Annotation by Michelle Graham. GO Biological Process: spindle assembly | SoyBase | N/A | ISS |
| GO:0051322 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anaphase | SoyBase | N/A | ISS |
| GO:0000228 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nuclear chromosome | SoyBase | N/A | ISS |
| GO:0000798 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nuclear cohesin complex | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005730 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleolus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG1213 | KOG | Sister chromatid cohesion complex Cohesin, subunit RAD21/SCC1 | JGI | ISS | |
| PTHR12585 | Panther | SCC1 / RAD21 FAMILY MEMBER | JGI | ISS | |
| PTHR12585:SF5 | Panther | COHESIN SUBUNIT RAD21 | JGI | ISS | |
| PF04824 | PFAM | Conserved region of Rad21 / Rec8 like protein | JGI | ISS | |
| PF04825 | PFAM | N terminus of Rad21 / Rec8 like protein | JGI | ISS | |
| UniRef100_G7J066 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Sister chromatid cohesion 1 protein n=1 Tax=Medicago truncatula RepID=G7J066_MEDTR | SoyBase | E_val: 5.00E-147 | ISS |
| UniRef100_I1KTJ8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KTJ8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g16091 not represented in the dataset |
Glyma08g16091 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g151600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g16091.1 sequence type=CDS gene model=Glyma08g16091 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTTATTCTCAAACCTTTTTGGCGCGAAAGGGCCCACTCTCCACCGTGTGGATCGCCGCTCACCTCCAACACCGCCTCAAGAAATCGCACTACACCGCCACCGACATCCCCTCCACCGTCCTGCGAATCATGGACCCCGGTGTCCCCATAGCGCTGCGAATGTCGGGACACCTTCTCCTCGGCGTCGTGAGGATATACTCCAAGAAAGTGGAATACCTTCACCAGGACTGCAAGGATGCACTCACCGGTCTCCACAAGGCGTTCGCCACGCTTCAGTTCGCCCAGCCGGAGGAGGCCAGGCCGGCACCGTTTCAATCGGTGACTCTCCCCGGAACGTTCGACCTCGATGCGCAAAACATAGACGACCAAATAGAGTACATCAGGGCTGAGGATCTTCACATGAGGAATCCAGAAGACATCACGCTGACAGATCTAATTCCTGTCACAATGGATGAGTATGTAGCTGTATCTTTTGATGAGGATATAATAATGGATTCTTCGCGTACAGAAGTGCTGCCTGATTCTGGGGGGACTGTACCAATGGAGGACATTATTCCCCAATCTCCATTGAGCAATGCGGTGGGTGCTGAAGATCATGGTCCAAGTGTTCACAGTCCTTCACAGGCAATCCAACCCGAGCCATTTGAGCTTCTTCGTCGCACTGCCAACAATGACAATATTCAAGTATTTCAGCATTCTGGTGGATTGTGTCCCAGTGTTCACAGTCCTTCACAGGGAACCCAAGTTGAGGTTGGTCGGGATGCCAACAATGATGATAATGTAGAAAACCCTCAGGTATTTACAAATCGTGAGGATAATGATGTTGCTGAACCAAACGGAGGTCTTGACCAAACTACGAATGAAAAGGATCATGTTCCTGGAATGATGCGTGATTTGAATTTTAGGATGTCTGTGCCATCTCCTATGAATCCACTAACTCCACCTACCTCTCAAGGAGGTGCCTCAGATGCACAAGCTCATGATGAGATTAATGTTCCCGATTTTGTGGTCCGTGAAAGTCCACCCATACAGCAGCCACAACGGAGAGGAAGAAAAAGAAAACAATTCTTTGATGAACCCATAGTGTTAACAAATGGATTCATGAGGAGTGCACTTAATAACACTCGTGATATACTGCGGAAAAGAAGGGATGTTCCTTCATCTAGTTTGGGTACCTGGAAATTGAACAATATTCGAAGAAAAGAACACATTTTTGACCAGCCCTTGTTAACTGGGATTGGCAAGGATCTTTTGGACATATCCAAAAGTGAATATGTACGTTCAAGATCTCATTTGGTCATCTTTGAGGAAGATCATGCAGATGTTAGGATGGGTGAAGAAACTCTTTCTCCAACTAACGAACCCCCTGAAGAATCATTAGCTGCTACTAATGAACCCCCTGAAGAGCCAATAGCTGCTACTAACCAACCCCCTGAAGAGCCAATAGCTGCTACTGACCATCCCCATGAAGAGCCAATAGCTACTACTGACCAAACCTCTGAAGAGGCAATAACTGCTACTTCTCCTGTTACTGATATGCAAGTTGAACACAATCGAAATGTTGCTGTCACCCCCCCTGCCACCGCCCAAGCACCACATGAAGATGATTATACGAGCCCTAATAGAAGAGATTGCTTCAATATGCCTTCATCTCATAACATATCCATTGCTTCTTTGAATACAAATATTGCATCTGAGAGAATGCATACATTAGATTATGCAGTGTCACCTGGAGTTCATGGATTGGAGGCAATGCAAACACCAGATTCAGATACTCATGACTTGATGAGTTCTGATAAAACAGATGAGTTTTGGTTTCTGAAATTGGACAGCACCACACCAGCCAGTTCACAAGGTACAAGTGGAAGTAACAAGACATTGTCTGAAAGGACCAAGCATGCAGCTCAATATTTTGAAAGACTTTCTTCAATCTCCCCAATTTTGGAGGAACCTGCTGGAGATCTCAGCTTAAACAAGATCTTGAAAGGGAAAACTAAAAATATTGCCGCTCGTATGTTCTTTGAAGTATTGGTTTTGAAGACTAATGGACTTCTTGATGTACAACAAGAAGAACCTTATGGTGATGTCAGCTTGAAGTTGGTCCCTATGCTTTGA
>Glyma08g16091.1 sequence type=predicted peptide gene model=Glyma08g16091 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFYSQTFLARKGPLSTVWIAAHLQHRLKKSHYTATDIPSTVLRIMDPGVPIALRMSGHLLLGVVRIYSKKVEYLHQDCKDALTGLHKAFATLQFAQPEEARPAPFQSVTLPGTFDLDAQNIDDQIEYIRAEDLHMRNPEDITLTDLIPVTMDEYVAVSFDEDIIMDSSRTEVLPDSGGTVPMEDIIPQSPLSNAVGAEDHGPSVHSPSQAIQPEPFELLRRTANNDNIQVFQHSGGLCPSVHSPSQGTQVEVGRDANNDDNVENPQVFTNREDNDVAEPNGGLDQTTNEKDHVPGMMRDLNFRMSVPSPMNPLTPPTSQGGASDAQAHDEINVPDFVVRESPPIQQPQRRGRKRKQFFDEPIVLTNGFMRSALNNTRDILRKRRDVPSSSLGTWKLNNIRRKEHIFDQPLLTGIGKDLLDISKSEYVRSRSHLVIFEEDHADVRMGEETLSPTNEPPEESLAATNEPPEEPIAATNQPPEEPIAATDHPHEEPIATTDQTSEEAITATSPVTDMQVEHNRNVAVTPPATAQAPHEDDYTSPNRRDCFNMPSSHNISIASLNTNIASERMHTLDYAVSPGVHGLEAMQTPDSDTHDLMSSDKTDEFWFLKLDSTTPASSQGTSGSNKTLSERTKHAAQYFERLSSISPILEEPAGDLSLNKILKGKTKNIAARMFFEVLVLKTNGLLDVQQEEPYGDVSLKLVPML*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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