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Report for Sequence Feature Glyma08g16072

Feature Type:gene_model
Chromosome:Gm08
Start:11720598
stop:11721584
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g16072
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G58950AT Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein | chr5:23801136-23803025 REVERSE LENGTH=525 SoyBaseE_val: 2.00E-112ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0004712GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine/tyrosine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG0192 KOG Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs JGI ISS
PTHR23257Panther SERINE-THREONINE PROTEIN KINASE JGI ISS
PTHR23257:SF81Panther PROTEIN-TYROSINE KINASE JGI ISS
PF07714PFAM Protein tyrosine kinase JGI ISS
UniRef100_Q39886UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein kinase n=1 Tax=Glycine max RepID=Q39886_SOYBN SoyBaseE_val: 1.00E-126ISS
UniRef100_UPI0002338A09UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002338A09 related cluster n=1 Tax=unknown RepID=UPI0002338A09 SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g16072
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g16072 not represented in the dataset
Glyma08g16072 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g16072
ParalogEvidenceComments
Glyma15g42551 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g16072 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g151400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g16072
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g16072
>Glyma08g16072.1   sequence type=CDS   gene model=Glyma08g16072   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAAGTTATCAATCAAATTGCACGATAAGTGCAAGAACCGCAAGGAATCATCATCATGGCCATTAACAAATTGTTTTCACCACGGTGGTGGAAGAGATGATGCAATTGGAATTGCACAAGAATGTAACGTTGATTTTTCTAATCTCTTCATTGGGCGCAAGTTTTCTCAAGGTGCACATAGTCAAATTTACCATGGTGTATACAAAAAGGAACATGTTGCTGTCAAATTCGTCAAGGTACGAGATAATGATGTAAAGGGAATCCCAAAATCCCTTTTGGAGGCTCAATTTTTAAGAGAAGTCATACATCTACCTCGTCTCCACCATCAAAATGTTGTAAAGTTCATAGGCGCATACAAAGACACTGATTTTTATTACATTCTCACGGAGTATCAACAAAAGGGGTCTTTGAGGGTGTATTTGAACAAGGTAGAGTCCAAGCCAATTTCTCTGAAGAGGGTGATAGCTTTTGCTTTGGATATTGCTCGTGGAATGGAGTATATACATGCACAAGGGATCATTCATAGAGACCTTAAACCAGAGAATGTCCTTGTTGATGGGGAAATTCGCCTCAAAATTGCTGATTTTGGCATTGCTTGTGAGGCTTCGAAGTTTGATTCGTTGAGGGGTACCTACCGTTGGATGGCTCCGGAGATGATCAAAGGAAAACGCTATGGGAGAAAGGTTGATGTGTACAGTTTTGGTCTTATTTTGTGGGAGTTGTTGAGTGGAACAGTGCCATTTGAGGGCATGAATCCAATCCAGGTTGCTGTTGCTGTGGCAGATAGGAATTCAAGGCCAATTATTCCTTCACATTGCCCACATGTTTTGAGTGATTTGATAAAGCAGTGTTGGGAATTGAAAGCTGAGAAGAGGCCTGAGTTCTGGCAGATTGTTCGAGTTTTGGAGCAATTAGATCAAGGTTGTAGTTTCTTGTCCCCCAAGAAACTCAAGCAACACCACCTTTCATTACGAAAATGGTAA
Predicted protein sequences of Glyma08g16072
>Glyma08g16072.1   sequence type=predicted peptide   gene model=Glyma08g16072   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKLSIKLHDKCKNRKESSSWPLTNCFHHGGGRDDAIGIAQECNVDFSNLFIGRKFSQGAHSQIYHGVYKKEHVAVKFVKVRDNDVKGIPKSLLEAQFLREVIHLPRLHHQNVVKFIGAYKDTDFYYILTEYQQKGSLRVYLNKVESKPISLKRVIAFALDIARGMEYIHAQGIIHRDLKPENVLVDGEIRLKIADFGIACEASKFDSLRGTYRWMAPEMIKGKRYGRKVDVYSFGLILWELLSGTVPFEGMNPIQVAVAVADRNSRPIIPSHCPHVLSDLIKQCWELKAEKRPEFWQIVRVLEQLDQGCSFLSPKKLKQHHLSLRKW*






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