SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G40850 | AT | Annotation by Michelle Graham. TAIR10: urophorphyrin methylase 1 | chr5:16367205-16368724 FORWARD LENGTH=369 | SoyBase | E_val: 3.00E-180 | ISS |
| GO:0006567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: threonine catabolic process | SoyBase | N/A | ISS |
| GO:0006779 | GO-bp | Annotation by Michelle Graham. GO Biological Process: porphyrin-containing compound biosynthetic process | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0019354 | GO-bp | Annotation by Michelle Graham. GO Biological Process: siroheme biosynthetic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0004851 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: uroporphyrin-III C-methyltransferase activity | SoyBase | N/A | ISS |
| GO:0008168 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity | SoyBase | N/A | ISS |
| GO:0043115 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: precorrin-2 dehydrogenase activity | SoyBase | N/A | ISS |
| KOG1527 | KOG | Uroporphyrin III methyltransferase | JGI | ISS | |
| PTHR21091 | Panther | METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED | JGI | ISS | |
| PTHR21091:SF16 | Panther | UROPORPHYRIN-III METHYLTRANSFERASE | JGI | ISS | |
| PF00590 | PFAM | Tetrapyrrole (Corrin/Porphyrin) Methylases | JGI | ISS | |
| UniRef100_A5A2I8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Uroporphiryn-III C-methyltransferase n=1 Tax=Medicago truncatula RepID=A5A2I8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0001CDD8F9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0001CDD8F9 related cluster n=1 Tax=unknown RepID=UPI0001CDD8F9 | SoyBase | E_val: 0 | ISS |
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Glyma08g16030 not represented in the dataset |
Glyma08g16030 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g150800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g16030.1 sequence type=CDS gene model=Glyma08g16030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTCTCCTCCACAAGCTCGCACCTTTCACCTCTCTCTACACCAATACCCCCCATTCCCCACCACCCCGCCGCCACGTCATCATCTCCTTCTCCGTCTCACCCTTCACCGAGAAGCACTCCACAGAGCGCTACCAGAGGGACCAATGGGTCTACCAGAGCACCACTCAAGAGGGTCAACCTCAAACGACGCCGTTTCCTCCTCTCCCGTGCGATTCAGCGTCCTTAAGAGACGACGACATAGCGTTGCAGCTGCCAGAGCTGAAGAAGCTGCTTCAGGTTCTGAGGGAGAAGAGGGAGTGTATCAATGGAGAGGGTTGTGAGCCGGGGAATGTGTTCTTGGTGGGAACGGGACCTGGGGACCCTGAGCTTCTCACTCTCAAGGCTGTGAGAGTCATCAAGAGTGCTGATCTTTTGCTCTATGACAGGTTGGTGTCCAATGATGTGCTGGATTTGGTTGGCCCCGGTGCTAGGCTTCTCTATGTGGGCAAGACTGCTGGGTATCATAGCAGAACACAGGAGGAAATACATGAGCTTCTTTTGAGTTTTGCAGAAGCTGGGGCAACTGTTGTGAGACTTAAAGGGGGTGATCCATTGGTGTTTGGCAGGGGTGGGGAGGAAATGGATTTTTTGCAACAGCAAGGTATCCAAGTGAAAGTTATTCCAGGTATAACTGCTGCATCTGGAATAGCAGCAGAGCTTGGAATTCCATTAACTCACCGTGGCATTGCAAATAGTGTGAGATTCCTCACAGGGCATTCAAGGAAAGGAGGATCCGATCCTCTCTTTGTATCGGAAAATGCTGCTGATCCGGATTCTACCTTGGTGGTTTACATGGGCTTGGCGACCTTCCCTTCACTTGCACAGAAGCTAATGCATCATGGTCTGTCCCCTCAGACCCCAGCTGCAGCCATTGAGCGAGGAACCACACTTCATCAGCGCACGGTGTTTGCTGAACTAAAGGACCTTCACGAGAAAATTACATCTGCTCAGCTGGTGTCACCAACGCTGATTATTATAGGAAAAGTTGTTGAACTATCACCATTTTGGCCAATTCCTACAAAAGAAGAATCATGTTTAATGCAGGCATGA
>Glyma08g16030.1 sequence type=predicted peptide gene model=Glyma08g16030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALLHKLAPFTSLYTNTPHSPPPRRHVIISFSVSPFTEKHSTERYQRDQWVYQSTTQEGQPQTTPFPPLPCDSASLRDDDIALQLPELKKLLQVLREKRECINGEGCEPGNVFLVGTGPGDPELLTLKAVRVIKSADLLLYDRLVSNDVLDLVGPGARLLYVGKTAGYHSRTQEEIHELLLSFAEAGATVVRLKGGDPLVFGRGGEEMDFLQQQGIQVKVIPGITAASGIAAELGIPLTHRGIANSVRFLTGHSRKGGSDPLFVSENAADPDSTLVVYMGLATFPSLAQKLMHHGLSPQTPAAAIERGTTLHQRTVFAELKDLHEKITSAQLVSPTLIIIGKVVELSPFWPIPTKEESCLMQA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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