Glyma08g15960 - SoyBase

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Report for Sequence Feature Glyma08g15960

Feature Type:	gene_model
Chromosome:	Gm08
Start:	11648333
stop:	11655213
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g15960

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G44480	AT	Annotation by Michelle Graham. TAIR10: beta glucosidase 17 \| chr2:18359780-18363001 FORWARD LENGTH=517	SoyBase	E_val: 6.00E-91	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004553	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds	SoyBase	N/A	ISS
GO:0043169	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cation binding	SoyBase	N/A	ISS
PTHR10353	Panther	GLYCOSIDE HYDROLASES	JGI		ISS
PF00232	PFAM	Glycosyl hydrolase family 1	JGI		ISS
UniRef100_A2SY66	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Vicianin hydrolase (Fragment) n=1 Tax=Vicia sativa subsp. nigra RepID=VICHY_VICSN	SoyBase	E_val: 2.00E-127	ISS
UniRef100_UPI00023380F4	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023380F4 related cluster n=1 Tax=unknown RepID=UPI00023380F4	SoyBase	E_val: 2.00E-176	ISS

Expression Patterns of Glyma08g15960

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g15960 not represented in the dataset	Glyma08g15960 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g15960 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g150400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g15960

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g15960

Limit To All Plant Sequences

>Glyma08g15960.4   sequence type=transcript   gene model=Glyma08g15960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTCCTTGATAATATAAACTTTTTATAAAATAATTTTCACCTCATATTATATATACTTTCCATTTTAAAAATTAATTTTACTATAGGTCTGCATCCTATCGATCATGGCTGCATGCTTATCTTTCGTATGTACCAATATTTTTTTAAAGAAAAATATTTGGCTGATGAACATATTTGAAATGATTGGAGAATAGTATGTCTATTTTAGCTTGTGATACTTATACCCCTACATCCTATCGACATGGCTCCGTGCTGGTCTTCCGTACTAATATAGTTGTCTTTTTTATTTTTAAATTTTGTTGTTATAAAGTTAACATAATATCAATAGTGACTTTTTGATATTTCTAATATATTTTTGAATGACGTGGAATATGAAAAGAAAAATTATTTTGATGATGAACATATTTGAAACGAAAACATATTTGAATGACGTGGGGTTTGAAACCTCGGTAAAAACAATTGAAAGATTTAATATATATATATTTTTTACAATTCTCAGTCAAAAACACTACAATTTTAACTAGAAAGGAATTTTGAATACACAAAAATAATTATTATTGTCTTAAGATAAATTAAGCCAACCACATATAGTTATTGATTGATATTAAAAACAGTTTTAATAATTAGAGATTGGGAATGAATCATAAAATCTTACATAGTGTAAGTCTTGCTCATCGGACAAAACATATCGTGGTTGTGTAGGCTCGTCAAAAAGGACAAATTGGGATCACTAATCCAACACACTACTTTTTGCCAAAATCTCAAAGTGCTGCAGATTACAAGGCAGCAAGTAGAGCTCTGGACTTCTTCTTTGGTTGGTATTCTGATCCGGTTTTCTATGGTGACTATCCGGAGAGTATGAAATCTTCAGTAGGTTCTAGGCTCCCAAAATTCACAAAAGCTGAATCTGAAGGTCTAAAAAATTCCATAGATTTTCTTGGTGTGAATTACTACACCACTTATTATGCGGAACATGCTGAACCTGTCAGTGCCAACCGAACCTTCTACACAGACATACTAGCCAGTCTCAGTACGGAAAGGAATGGTCTACATGTTGGAACACCGACTGATTTGAATTGGCTCTTTATCTTTCCAAAGGGAATTCATCTTCTTATGGCACACATAAAGGATAAATACAAGAATCTTCCTATTTACATCACTGAAAATGGCATGGCTGAATCAAGGAATGACTCAATACCAGTCAATGAAGCCCGCAAGGATAGTATAAGGATTAGATACCATGATGGCCATCTTAAATTCCTTCTTCAAGCGATCAAGGAAGGTGTTAATTTGAAGGGCTATTATGCATGGTCATTTTCGGACAGTTTTGAATGGGATGCTGGTTACACAGTTCGATTCGGGCTCATATATGTGGATTACAAGAACAACTTGAAAAGATACCCCAAGTTCTCTGCTTTTTGGTTGCAAAAGTTCCTTCTCAAGTGATCTGAATTTAGTGTTCCTTTGACATGTCTAGTGTTTTTCTTGTTTATTTCCCTAGATTTCATCGTATATCACTTGTGTTGGATGTAATCAAGAGATCATTTTATCAAATAAATAATGCCAAATGGCATGTCGAAGTAAAATACCACCGGTTCATTATAGTGGCCATGAGTTCTAGAGGTTCATTTTGAGGAAGAATGCTAATTAATAATAATCTTATCACTCTTTTTACGTTCTCGCCTATCGGGTGAAATTCACAAGTCTGACTAGATATGTTAATTGCATTCCCTATTTGATGAGTAATCCTTCCTAAACTAGCAAGACTCACTTGAATTTCAATCAATACGAATAAGTATGTTGAAAAGAATATTAGAGATTAAGGGTTGTTGTAATTTATTTTTTTTGAA

>Glyma08g15960.5   sequence type=transcript   gene model=Glyma08g15960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTAGGCTCGTCAAAAAGGACAAATTGGGATCACTAATCCAACACACTACTTTTTGCCAAAATCTCAAAGTGCTGCAGATTACAAGGCAGCAAGTAGAGCTCTGGACTTCTTCTTTGGTTGGTATTCTGATCCGGTTTTCTATGGTGACTATCCGGAGAGTATGAAATCTTCAGTAGGTTCTAGGCTCCCAAAATTCACAAAAGCTGAATCTGAAGGTCTAAAAAATTCCATAGATTTTCTTGGTGTGAATTACTACACCACTTATTATGCGGAACATGCTGAACCTGTCAGTGCCAACCGAACCTTCTACACAGACATACTAGCCAGTCTCAGTACGGAAAGGAATGGTCTACATGTTGGAACACCGACTGATTTGAATTGGCTCTTTATCTTTCCAAAGGGAATTCATCTTCTTATGGCACACATAAAGGATAAATACAAGAATCTTCCTATTTACATCACTGAAAATGGCATGGCTGAATCAAGGAATGACTCAATACCAGTCAATGAAGCCCGCAAGGATAGTATAAGGATTAGATACCATGATGGCCATCTTAAATTCCTTCTTCAAGCGATCAAGTGAGAAAGTGAAATGGATTTCTCTATCTATACATATATTTGGTTCATAATAAATTGTTAATTTCTGGCAATATTTTTTTTCCTTTCTCTTTCAGGGAAGGTGTTAATTTGAAGGGCTATTATGCATGGTCATTTTCGGACAGTTTTGAATGGGATGCTGGTTACACAGTTCGATTCGGGCTCATATATGTGGATTACAAGAACAACTTGAAAAGATACCCCAAGTTCTCTGCTTTTTGGTTGCAAAAGTTCCTTCTCAAGTGATCTGAATTTAGTGTTCCTTTGACATGTCTAGTGTTTTTCTTGTTTATTTCCCTAGATTTCATCGTATATCACTTGTGTTGGATGTAATCAAGAGATCATTTTATCAAATAAATAATGCCAAATGGCATGTCGAAGTAAAATACCACCGGTTCATTATAGTGGCCATGAGTTCTAGAGGTTCATTTTGAGGAAGAATGCTAATTAATAATAATCTTATCACTCTTTTTACGTTCTCGCCTATCGGGTGAAATTCACAAGTCTGACTAGATATGTTAATTGCATTCCCTATTTGATGAGTAATCCTTCCTAAACTAGCAAGACTCACTTGAATTTCAATCAATACGAATAAGTATGTTGAAAAGAATATTAGAGATTAAGGGTTGTTGTAATTTATTTTTTTTGAA

>Glyma08g15960.6   sequence type=transcript   gene model=Glyma08g15960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAAAATTGAAAAAGTTAAATTAACTATTTGTTTGTTTGCTTTGACCATTAATTTGATTTTGAAATTGATTTTGTTAGGATTGAAAGTTAATCCAAACACACTTAGTGAAGTAAAACCATACAATAGCAGTGAACATGCATTTCTATTTTAATTTCTGCCACTAATGAAACAAAATTTTATTGTTGTGCAGACTGATTTGAATTGGCTCTTTATCTTTCCAAAGGGAATTCATCTTCTTATGGCACACATAAAGGATAAATACAAGAATCTTCCTATTTACATCACTGAAAATGGTAAATATACCATACAATATTCAACTTCATTTTGGTTAGTAATTAGACTCAGTAAGATTAATTCCTATCATTATTTTTTATCACCCGATTAATTCCTTATTTAAGAACCTAATTGTTTCTGTACTGATCTAGTTTCTTTGTCCATAATAGCTGATGCAATAAGTGACATGAAGCATAGTTTTATGAAACACTAGCTTAACTGCAAGTAATTGATTAGTTAATTAGAAATTAATTATTTTTGGTTCTTAATTTTTTTAGGCATGGCTGAATCAAGGAATGACTCAATACCAGTCAATGAAGCCCGCAAGGATAGTATAAGGATTAGATACCATGATGGCCATCTTAAATTCCTTCTTCAAGCGATCAAGGAAGGTGTTAATTTGAAGGGCTATTATGCATGGTCATTTTCGGACAGTTTTGAATGGGATGCTGGTTACACAGTTCGATTCGGGCTCATATATGTGGATTACAAGAACAACTTGAAAAGATACCCCAAGTTCTCTGCTTTTTGGTTGCAAAAGTTCCTTCTCAAGTGATCTGAATTTAGTGTTCCTTTGACATGTCTAGTGTTTTTCTTGTTTATTTCCCTAGATTTCATCGTATATCACTTGTGTTGGATGTAATCAAGAGATCATTTTATCAAATAAATAATGCCAAATGGCATGTCGAAGTAAAATACCACCGGTTCATTATAGTGGCCATGAGTTCTAGAGGTTCATTTTGAGGAAGAATGCTAATTAATAATAATCTTATCACTCTTTTTACGTTCTCGCCTATCGGGTGAAATTCACAAGTCTGACTAGATATGTTAATTGCATTCCCTATTTGATGAGTAATCCTTCCTAAACTAGCAAGACTCACTTGAATTTCAATCAATACGAATAAGTATGTTGAAAAGAATATTAGAGATTAAGGGTTGTTGTAATTTATTTTTTTTGAA

>Glyma08g15960.7   sequence type=transcript   gene model=Glyma08g15960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTGTGTAGGCTCGTCAAAAAGGACAAATTGGGATCACTAATCCAACACACTACTTTTTGCCAAAATCTCAAAGTGCTGCAGATTACAAGGCAGCAAGTAGAGCTCTGGACTTCTTCTTTGGTTGGTATTCTGATCCGGTTTTCTATGGTGACTATCCGGAGAGTATGAAATCTTCAGTAGGTTCTAGGCTCCCAAAATTCACAAAAGCTGAATCTGAAGGTCTAAAAAATTCCATAGATTTTCTTGGTGTGAATTACTACACCACTTATTATGCGGAACATGCTGAACCTGTCAGTGCCAACCGAACCTTCTACACAGACATACTAGCCAGTCTCAGTACGGAAAGGAATGGTCTACATGTTGGAACACCGGTATAATAAATTTTCTGCCAAACTAATTAAACTTATGCTATTTAATTTTTGTTGGTTGATATATATATATACCATTTCCTTCATGCCATACAAGTAGTTTTTTCTGTATCTATGAAACAAATTATCTAAAATTATTTCAACTCAATTAATTTTGATCTTATAATCAATTATGTCTA

Coding sequences of Glyma08g15960

Limit To All Plant Sequences

>Glyma08g15960.3   sequence type=CDS   gene model=Glyma08g15960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAACCCAAAGTGCTTCTCTCCTCTGTCTTTTTCTCTCTCTTGCTATCCTTTTGGCTAGTGGCACTGCTGCAAGTGCAACTCCAAGAAGCGCAGTGCCAAGCCACCATGTTTCAACATTCAACAGAAGCCTTTTTCCTTCCACTTTTCTCTTTGGAATTGGTTCTTCTGCTTACCAGGCAGAAGGAGCAGCAAGTGTAGATGGGAGAGGACCAAGCATATGGGACACCTACACTAGACAGCATACTGAAAAGATTTGGGATCATAGCACCGGTGACATGGGAGCTGATTTTTATCATCGATACAAGGGTGACATAAAAATAGCGAAAGAAATTGGGCTGGACTCTTTCAGATTCTCTATCTCATGGTCAAGAATATTCCCAAAGGGCAAGGGAGCAGTTAACCCCCTTGGGGTTAAATTCTACAACAATGTCATCGATGAGATCCTAGCAAATGGTTTAAAACCTTTTGTCACTCTTTTTCATTGGGACTTTCCACAAGCTCTTGAAGATGAGTATGGAGGATTCCGTAGTCCTAAAGTAGTGGCGGATTTTCGTGGCTACGCAAACTTCTGCTTCAAGACCTTTGGAGACAGAGTCAAATATTGGGTCACTTTGAATGAACCCTTATCATTTAGTCTCAATGGCTACAATGGTGGCACCTTTGCACCAGGTAGATGTTCTAAATACGTTGCCAATTGTAGTGCTGGCGATTCATCCACTGAACCCTATATCACTGATTTGAATTGGCTCTTTATCTTTCCAAAGGGAATTCATCTTCTTATGGCACACATAAAGGATAAATACAAGAATCTTCCTATTTACATCACTGAAAATGGCATGGCTGAATCAAGGAATGACTCAATACCAGTCAATGAAGCCCGCAAGGATAGTATAAGGATTAGATACCATGATGGCCATCTTAAATTCCTTCTTCAAGCGATCAAGGAAGGTGTTAATTTGAAGGGCTATTATGCATGGTCATTTTCGGACAGTTTTGAATGGGATGCTGGTTACACAGTTCGATTCGGGCTCATATATGTGGATTACAAGAACAACTTGAAAAGATACCCCAAGTTCTCTGCTTTTTGGTTGCAAAAGTTCCTTCTCAAGTGA

>Glyma08g15960.4   sequence type=CDS   gene model=Glyma08g15960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAATCTTCAGTAGGTTCTAGGCTCCCAAAATTCACAAAAGCTGAATCTGAAGGTCTAAAAAATTCCATAGATTTTCTTGGTGTGAATTACTACACCACTTATTATGCGGAACATGCTGAACCTGTCAGTGCCAACCGAACCTTCTACACAGACATACTAGCCAGTCTCAGTACGGAAAGGAATGGTCTACATGTTGGAACACCGACTGATTTGAATTGGCTCTTTATCTTTCCAAAGGGAATTCATCTTCTTATGGCACACATAAAGGATAAATACAAGAATCTTCCTATTTACATCACTGAAAATGGCATGGCTGAATCAAGGAATGACTCAATACCAGTCAATGAAGCCCGCAAGGATAGTATAAGGATTAGATACCATGATGGCCATCTTAAATTCCTTCTTCAAGCGATCAAGGAAGGTGTTAATTTGAAGGGCTATTATGCATGGTCATTTTCGGACAGTTTTGAATGGGATGCTGGTTACACAGTTCGATTCGGGCTCATATATGTGGATTACAAGAACAACTTGAAAAGATACCCCAAGTTCTCTGCTTTTTGGTTGCAAAAGTTCCTTCTCAAGTGA

>Glyma08g15960.5   sequence type=CDS   gene model=Glyma08g15960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAATCTTCAGTAGGTTCTAGGCTCCCAAAATTCACAAAAGCTGAATCTGAAGGTCTAAAAAATTCCATAGATTTTCTTGGTGTGAATTACTACACCACTTATTATGCGGAACATGCTGAACCTGTCAGTGCCAACCGAACCTTCTACACAGACATACTAGCCAGTCTCAGTACGGAAAGGAATGGTCTACATGTTGGAACACCGACTGATTTGAATTGGCTCTTTATCTTTCCAAAGGGAATTCATCTTCTTATGGCACACATAAAGGATAAATACAAGAATCTTCCTATTTACATCACTGAAAATGGCATGGCTGAATCAAGGAATGACTCAATACCAGTCAATGAAGCCCGCAAGGATAGTATAAGGATTAGATACCATGATGGCCATCTTAAATTCCTTCTTCAAGCGATCAAGTGA

>Glyma08g15960.6   sequence type=CDS   gene model=Glyma08g15960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGAATCAAGGAATGACTCAATACCAGTCAATGAAGCCCGCAAGGATAGTATAAGGATTAGATACCATGATGGCCATCTTAAATTCCTTCTTCAAGCGATCAAGGAAGGTGTTAATTTGAAGGGCTATTATGCATGGTCATTTTCGGACAGTTTTGAATGGGATGCTGGTTACACAGTTCGATTCGGGCTCATATATGTGGATTACAAGAACAACTTGAAAAGATACCCCAAGTTCTCTGCTTTTTGGTTGCAAAAGTTCCTTCTCAAGTGA

>Glyma08g15960.7   sequence type=CDS   gene model=Glyma08g15960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAATCTTCAGTAGGTTCTAGGCTCCCAAAATTCACAAAAGCTGAATCTGAAGGTCTAAAAAATTCCATAGATTTTCTTGGTGTGAATTACTACACCACTTATTATGCGGAACATGCTGAACCTGTCAGTGCCAACCGAACCTTCTACACAGACATACTAGCCAGTCTCAGTACGGAAAGGAATGGTCTACATGTTGGAACACCGGTATAA

Predicted protein sequences of Glyma08g15960

Limit To All Plant Sequences

>Glyma08g15960.3   sequence type=predicted peptide   gene model=Glyma08g15960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKTQSASLLCLFLSLAILLASGTAASATPRSAVPSHHVSTFNRSLFPSTFLFGIGSSAYQAEGAASVDGRGPSIWDTYTRQHTEKIWDHSTGDMGADFYHRYKGDIKIAKEIGLDSFRFSISWSRIFPKGKGAVNPLGVKFYNNVIDEILANGLKPFVTLFHWDFPQALEDEYGGFRSPKVVADFRGYANFCFKTFGDRVKYWVTLNEPLSFSLNGYNGGTFAPGRCSKYVANCSAGDSSTEPYITDLNWLFIFPKGIHLLMAHIKDKYKNLPIYITENGMAESRNDSIPVNEARKDSIRIRYHDGHLKFLLQAIKEGVNLKGYYAWSFSDSFEWDAGYTVRFGLIYVDYKNNLKRYPKFSAFWLQKFLLK*

>Glyma08g15960.4   sequence type=predicted peptide   gene model=Glyma08g15960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKSSVGSRLPKFTKAESEGLKNSIDFLGVNYYTTYYAEHAEPVSANRTFYTDILASLSTERNGLHVGTPTDLNWLFIFPKGIHLLMAHIKDKYKNLPIYITENGMAESRNDSIPVNEARKDSIRIRYHDGHLKFLLQAIKEGVNLKGYYAWSFSDSFEWDAGYTVRFGLIYVDYKNNLKRYPKFSAFWLQKFLLK*

>Glyma08g15960.5   sequence type=predicted peptide   gene model=Glyma08g15960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKSSVGSRLPKFTKAESEGLKNSIDFLGVNYYTTYYAEHAEPVSANRTFYTDILASLSTERNGLHVGTPTDLNWLFIFPKGIHLLMAHIKDKYKNLPIYITENGMAESRNDSIPVNEARKDSIRIRYHDGHLKFLLQAIK*

>Glyma08g15960.6   sequence type=predicted peptide   gene model=Glyma08g15960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAESRNDSIPVNEARKDSIRIRYHDGHLKFLLQAIKEGVNLKGYYAWSFSDSFEWDAGYTVRFGLIYVDYKNNLKRYPKFSAFWLQKFLLK*

>Glyma08g15960.7   sequence type=predicted peptide   gene model=Glyma08g15960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKSSVGSRLPKFTKAESEGLKNSIDFLGVNYYTTYYAEHAEPVSANRTFYTDILASLSTERNGLHVGTPV*

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