Glyma08g15940 - SoyBase

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Report for Sequence Feature Glyma08g15940

Feature Type:	gene_model
Chromosome:	Gm08
Start:	11625008
stop:	11630145
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g15940

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G12320	AT	Annotation by Michelle Graham. TAIR10: ankyrin repeat family protein \| chr5:3982762-3983899 FORWARD LENGTH=144	SoyBase	E_val: 1.00E-58	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
KOG4214	KOG	Myotrophin and similar proteins	JGI		ISS
PTHR24193	Panther	FAMILY NOT NAMED	JGI		ISS
PF00023	PFAM	Ankyrin repeat	JGI		ISS
UniRef100_C6T063	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T063_SOYBN	SoyBase	E_val: 3.00E-110	ISS
UniRef100_G7LGL0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ankyrin repeat domain-containing protein n=1 Tax=Medicago truncatula RepID=G7LGL0_MEDTR	SoyBase	E_val: 4.00E-81	ISS

Expression Patterns of Glyma08g15940

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g15940 not represented in the dataset	Glyma08g15940 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g15940 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g150200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g15940

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g15940

Limit To All Plant Sequences

>Glyma08g15940.2   sequence type=transcript   gene model=Glyma08g15940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTCAAAATTGCTAACGGAGGAAGGATAAAGGATTGTTGTTTCCGTTACTTTATTTTGAGGAACACATAATCAAGGGTACGCACAGCGCGGCGGCCAAGCCATCTCAAGCCGGAGCTGCTCTTCACCCTTCCTCCTACTCGGTACAACACAACAACATTTGTTGTGGAGTGAATGGGTGCGACGGAGGCCAACACGACACTTCAAGCTCGTCCCGAAACGACGTCGGAGAATATCGAAGCATTGCTTGATGCTGCAAGATACGATGACATGGATGATGTTAAGAGCTTAGAAGCCAGTGGTGTTCCTCTTGATTCCAAGGATGAACAAGGGAGGACAGCTCTTCATATGGCTGCAGCTAATGGACATATTGATATTGTGGAGTATTTAATCAGTAGAGGGGTGGATCTTAATTCACCAAATGAGGAAAAGAATACACCTCTTCATTGGGCATGTCTCAATGGGCATGTGGAGGCTGTGAAGAAATTAATCATGGCTGGAGCTAATGTTAGTGTCTTAAACAGTCACGAGAGGACTCCAATGGATGAAGCAGTGAGTGGGGGAAAGCCAGAAGTGATGGATGCGATTAATGAAGCAGTGGCACTAGTTGAACTTCGTGGTGCTATGGTTTTTGCACAGGAAACTTGAAGTTTATGCTACACTAACTAGCTTGTAATATGAGAAATCTGTGATGGTTATACATGTTTTCCTATAATGGGTATTTTGTTAGTTCGAACAAGATCATGAGTGTTTTGGTATCCTCCTCCCTCCCAAGTTTCCATTATGGAATTCCTCTTCGGAAAATGGAATTGAAGGAGTTGGAATGAAGTGGATAGTTTTACTTTTGAAGTTAATTAGTTATTTTTTTTCCTGGAAAATCAATGAAATGCCATACACTCGAATATGAGAAATTAACATTTTATTTATCCATTTCTTTAATCCTCAAATTAGAATATCGA

>Glyma08g15940.3   sequence type=transcript   gene model=Glyma08g15940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGCACCCTCACCAATCTCTAACATTAGGGTACGCACAGCGCGGCGGCCAAGCCATCTCAAGCCGGAGCTGCTCTTCACCCTTCCTCCTACTCGGTACAACACAACAACATTTGTTGTGGAGTGAATGGGTGCGACGGAGGCCAACACGACACTTCAAGCTCGTCCCGAAACGACGTCGGAGAATATCGAAGCATTGCTTGATGCTGCAAGATACGATGACATGGATGATGTTAAGAGCTTAGAAGCCAGTGGTGTTCCTCTTGATTCCAAGGATGAACAAGGGAGGACAGCTCTTCATATGGCTGCAGCTAATGGACATATTGATATTGTGGAGTATTTAATCAGTAGAGGGGTGGATCTTAATTCACCAAATGAGGAAAAGAATACACCTCTTCATTGGGCATGTCTCAATGGGCATGTGGAGGCTGTGAAGAAATTAATCATGGCTGGAGCTAATGTTAGTGTCTTAAACAGTCACGAGAGGACTCCAATGGATGAAGCAGTGAGTGGGGGAAAGCCAGAAGTGATGGATGCGATTAATGAAGCAGTGGCACTAGTTGAACTTCGTGGTGCTATGGTTTTTGCACAGGAAACTTGAAGTTTATGCTACACTAACTAGCTTGTAATATGAGAAATCTGTGATGGTTATACATGTTTTCCTATAATGGGTATTTTGTTAGTTCGAACAAGATCATGAGTGTTTTGGTATCCTCCTCCCTCCCAAGTTTCCATTATGGAATTCCTCTTCGGAAAATGGAATTGAAGGAGTTGGAATGAAGTGGATAGTTTTACTTTTGAAGTTAATTAGTTATTTTTTTTCCTGGAAAATCAATGAAATGCCATACACTCGAATATGAGAAATTAACATTTTATTTATCCATTTCTTTAATCCTCAAATTAGAATATCGA

>Glyma08g15940.4   sequence type=transcript   gene model=Glyma08g15940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTCAAAATTGCTAACGGAGGAAGGATAAAGGATTGTTGTTTCCGTTACTTTATTTTGAGGAACACATAATCAAGGGTACGCACAGCGCGGCGGCCAAGCCATCTCAAGCCGGAGCTGCTCTTCACCCTTCCTCCTACTCGGTACAACACAACAACATTTGTTGTGGAGTGAATGGGTGCGACGGAGGCCAACACGACACTTCAAGCTCGTCCCGAAACGACGTCGGAGAATATCGAAGCATTGCTTGATGCTGCAAGATACGATGACATGGATGATGTTAAGAGCTTAGAAGCCAGTGGTGTTCCTCTTGATTCCAAGGATGAACAAGGGAGGACAGCTCTTCATATGGCTGCAGCTAATGGACATATTGATATTGTGGAGTATTTAATCAGTAGAGGGGTGGCTGTGAAGAAATTAATCATGGCTGGAGCTAATGTTAGTGTCTTAAACAGTCACGAGAGGACTCCAATGGATGAAGCAGTGAGTGGGGGAAAGCCAGAAGTGATGGATGCGATTAATGAAGCAGTGGCACTAGTTGAACTTCGTGGTGCTATGGTTTTTGCACAGGAAACTTGAAGTTTATGCTACACTAACTAGCTTGTAATATGAGAAATCTGTGATGGTTATACATGTTTTCCTATAATGGGTATTTTGTTAGTTCGAACAAGATCATGAGTGTTTTGGTATCCTCCTCCCTCCCAAGTTTCCATTATGGAATTCCTCTTCGGAAAATGGAATTGAAGGAGTTGGAATGAAGTGGATAGTTTTACTTTTGAAGTTAATTAGTTATTTTTTTTCCTGGAAAATCAATGAAATGCCATACACTCGAATATGAGAAATTAACATTTTATTTATCCATTTCTTTAATCCTCAAATTAGAATATCGA

>Glyma08g15940.5   sequence type=transcript   gene model=Glyma08g15940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCAAAAAATAAGAATTATAATTTTTTAATCTAAAATTCCTTGGAAAAATAATTCTCTTTAATGTTTTCATGATCCCACCGCACCCTCACCAATCTCTAACATTAGGGTACGCACAGCGCGGCGGCCAAGCCATCTCAAGCCGGAGCTGCTCTTCACCCTTCCTCCTACTCGGTACAACACAACAACATTTGTTGTGGAGTGAATGGGTGCGACGGAGGCCAACACGACACTTCAAGCTCGTCCCGAAACGACGTCGGAGAATATCGAAGCATTGCTTGATGCTGCAAGATACGATGACATGGATGATGTTAAGAGCTTAGAAGCCAGTGGTGTTCCTCTTGATTCCAAGGATGAACAAGGGAGGACAGCTCTTCATATGGCTGCAGCTAATGGACATATTGATATTGTGGAGTATTTAATCAGTAGAGGGGTGGCTGTGAAGAAATTAATCATGGCTGGAGCTAATGTTAGTGTCTTAAACAGTCACGAGAGGACTCCAATGGATGAAGCAGTGAGTGGGGGAAAGCCAGAAGTGATGGATGCGATTAATGAAGCAGTGGCACTAGTTGAACTTCGTGGTGCTATGGTTTTTGCACAGGAAACTTGAAGTTTATGCTACACTAACTAGCTTGTAATATGAGAAATCTGTGATGGTTATACATGTTTTCCTATAATGGGTATTTTGTTAGTTCGAACAAGATCATGAGTGTTTTGGTATCCTCCTCCCTCCCAAGTTTCCATTATGGAATTCCTCTTCGGAAAATGGAATTGAAGGAGTTGGAATGAAGTGGATAGTTTTACTTTTGAAGTTAATTAGTTATTTTTTTTCCTGGAAAATCAATGAAATGCCATACACTCGAATATGAGAAATTAACATTTTATTTATCCATTTCTTTAATCCTCAAATTAGAATATCGA

Coding sequences of Glyma08g15940

Limit To All Plant Sequences

>Glyma08g15940.1   sequence type=CDS   gene model=Glyma08g15940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGCGACGGAGGCCAACACGACACTTCAAGCTCGTCCCGAAACGACGTCGGAGAATATCGAAGCATTGCTTGATGCTGCAAGATACGATGACATGGATGATGTTAAGAGCTTAGAAGCCAGTGGTGTTCCTCTTGATTCCAAGGATGAACAAGGGAGGACAGCTCTTCATATGGCTGCAGCTAATGGACATATTGATATTGTGGAGTATTTAATCAGTAGAGGGGTGGATCTTAATTCACCAAATGAGGAAAAGAATACACCTCTTCATTGGGCATGTCTCAATGGGCATGTGGAGGCTGTGAAGAAATTAATCATGGCTGGAGCTAATGTTAGTGTCTTAAACAGTCACGAGAGGACTCCAATGGATGAAGCAGTGAGTGGGGGAAAGCCAGAAGTGATGGATGCGATTAATGAAGCAGTGGCACTAGTTGAACTTCGTGGTGCTATGGTTTTTGCACAGGAAACTTGA

>Glyma08g15940.2   sequence type=CDS   gene model=Glyma08g15940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGCGACGGAGGCCAACACGACACTTCAAGCTCGTCCCGAAACGACGTCGGAGAATATCGAAGCATTGCTTGATGCTGCAAGATACGATGACATGGATGATGTTAAGAGCTTAGAAGCCAGTGGTGTTCCTCTTGATTCCAAGGATGAACAAGGGAGGACAGCTCTTCATATGGCTGCAGCTAATGGACATATTGATATTGTGGAGTATTTAATCAGTAGAGGGGTGGATCTTAATTCACCAAATGAGGAAAAGAATACACCTCTTCATTGGGCATGTCTCAATGGGCATGTGGAGGCTGTGAAGAAATTAATCATGGCTGGAGCTAATGTTAGTGTCTTAAACAGTCACGAGAGGACTCCAATGGATGAAGCAGTGAGTGGGGGAAAGCCAGAAGTGATGGATGCGATTAATGAAGCAGTGGCACTAGTTGAACTTCGTGGTGCTATGGTTTTTGCACAGGAAACTTGA

>Glyma08g15940.3   sequence type=CDS   gene model=Glyma08g15940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGCGACGGAGGCCAACACGACACTTCAAGCTCGTCCCGAAACGACGTCGGAGAATATCGAAGCATTGCTTGATGCTGCAAGATACGATGACATGGATGATGTTAAGAGCTTAGAAGCCAGTGGTGTTCCTCTTGATTCCAAGGATGAACAAGGGAGGACAGCTCTTCATATGGCTGCAGCTAATGGACATATTGATATTGTGGAGTATTTAATCAGTAGAGGGGTGGATCTTAATTCACCAAATGAGGAAAAGAATACACCTCTTCATTGGGCATGTCTCAATGGGCATGTGGAGGCTGTGAAGAAATTAATCATGGCTGGAGCTAATGTTAGTGTCTTAAACAGTCACGAGAGGACTCCAATGGATGAAGCAGTGAGTGGGGGAAAGCCAGAAGTGATGGATGCGATTAATGAAGCAGTGGCACTAGTTGAACTTCGTGGTGCTATGGTTTTTGCACAGGAAACTTGA

>Glyma08g15940.4   sequence type=CDS   gene model=Glyma08g15940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGCGACGGAGGCCAACACGACACTTCAAGCTCGTCCCGAAACGACGTCGGAGAATATCGAAGCATTGCTTGATGCTGCAAGATACGATGACATGGATGATGTTAAGAGCTTAGAAGCCAGTGGTGTTCCTCTTGATTCCAAGGATGAACAAGGGAGGACAGCTCTTCATATGGCTGCAGCTAATGGACATATTGATATTGTGGAGTATTTAATCAGTAGAGGGGTGGCTGTGAAGAAATTAATCATGGCTGGAGCTAATGTTAGTGTCTTAAACAGTCACGAGAGGACTCCAATGGATGAAGCAGTGAGTGGGGGAAAGCCAGAAGTGATGGATGCGATTAATGAAGCAGTGGCACTAGTTGAACTTCGTGGTGCTATGGTTTTTGCACAGGAAACTTGA

>Glyma08g15940.5   sequence type=CDS   gene model=Glyma08g15940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGCGACGGAGGCCAACACGACACTTCAAGCTCGTCCCGAAACGACGTCGGAGAATATCGAAGCATTGCTTGATGCTGCAAGATACGATGACATGGATGATGTTAAGAGCTTAGAAGCCAGTGGTGTTCCTCTTGATTCCAAGGATGAACAAGGGAGGACAGCTCTTCATATGGCTGCAGCTAATGGACATATTGATATTGTGGAGTATTTAATCAGTAGAGGGGTGGCTGTGAAGAAATTAATCATGGCTGGAGCTAATGTTAGTGTCTTAAACAGTCACGAGAGGACTCCAATGGATGAAGCAGTGAGTGGGGGAAAGCCAGAAGTGATGGATGCGATTAATGAAGCAGTGGCACTAGTTGAACTTCGTGGTGCTATGGTTTTTGCACAGGAAACTTGA

Predicted protein sequences of Glyma08g15940

Limit To All Plant Sequences

>Glyma08g15940.1   sequence type=predicted peptide   gene model=Glyma08g15940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGATEANTTLQARPETTSENIEALLDAARYDDMDDVKSLEASGVPLDSKDEQGRTALHMAAANGHIDIVEYLISRGVDLNSPNEEKNTPLHWACLNGHVEAVKKLIMAGANVSVLNSHERTPMDEAVSGGKPEVMDAINEAVALVELRGAMVFAQET*

>Glyma08g15940.2   sequence type=predicted peptide   gene model=Glyma08g15940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGATEANTTLQARPETTSENIEALLDAARYDDMDDVKSLEASGVPLDSKDEQGRTALHMAAANGHIDIVEYLISRGVDLNSPNEEKNTPLHWACLNGHVEAVKKLIMAGANVSVLNSHERTPMDEAVSGGKPEVMDAINEAVALVELRGAMVFAQET*

>Glyma08g15940.3   sequence type=predicted peptide   gene model=Glyma08g15940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGATEANTTLQARPETTSENIEALLDAARYDDMDDVKSLEASGVPLDSKDEQGRTALHMAAANGHIDIVEYLISRGVDLNSPNEEKNTPLHWACLNGHVEAVKKLIMAGANVSVLNSHERTPMDEAVSGGKPEVMDAINEAVALVELRGAMVFAQET*

>Glyma08g15940.4   sequence type=predicted peptide   gene model=Glyma08g15940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGATEANTTLQARPETTSENIEALLDAARYDDMDDVKSLEASGVPLDSKDEQGRTALHMAAANGHIDIVEYLISRGVAVKKLIMAGANVSVLNSHERTPMDEAVSGGKPEVMDAINEAVALVELRGAMVFAQET*

>Glyma08g15940.5   sequence type=predicted peptide   gene model=Glyma08g15940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGATEANTTLQARPETTSENIEALLDAARYDDMDDVKSLEASGVPLDSKDEQGRTALHMAAANGHIDIVEYLISRGVAVKKLIMAGANVSVLNSHERTPMDEAVSGGKPEVMDAINEAVALVELRGAMVFAQET*

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