SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g15870

Feature Type:gene_model
Chromosome:Gm08
Start:11557045
stop:11562288
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g15870
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G44430AT Annotation by Michelle Graham. TAIR10: DNA-binding bromodomain-containing protein | chr2:18333603-18336165 FORWARD LENGTH=646 SoyBaseE_val: 2.00E-94ISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
PTHR22880Panther FALZ-RELATED BROMODOMAIN-CONTAINING PROTEINS JGI ISS
PTHR22880:SF52Panther DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN JGI ISS
PF00249PFAM Myb-like DNA-binding domain JGI ISS
PF00439PFAM Bromodomain JGI ISS
UniRef100_G7IJ06UniRef Annotation by Michelle Graham. Most informative UniRef hit: Bromodomain protein n=1 Tax=Medicago truncatula RepID=G7IJ06_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI0002338A05UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002338A05 related cluster n=1 Tax=unknown RepID=UPI0002338A05 SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g15870
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g15870
ParalogEvidenceComments
Glyma15g42440 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g15870 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g149600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g15870
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g15870
>Glyma08g15870.1   sequence type=CDS   gene model=Glyma08g15870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAACCACCAAAACCACAAGGTAGAACCAGAACCTGACATAGAGAAGAACCATAACCACCGCCACCAACAGCAACAACACCGTAACGAAGCGTGGGGCACCTGGGAGGAGCTGTTGCTAGCGTGCGCCGTGAACCGCCATGGCTTCACGGACTGGGACGCCGTCGCCATGGAGGTCCAGTCGCGCACCACGCGCCTCCTCGCCACCGCGCGCCACTGCGAGCAGAAATTTCATGATCTCAGCCGCCGATTCGCCGTCCAATGCAACGACGACGTTCCTCCGCCGCGCCAGAACGGCGCCGCCGCCGCTATCTCTGATCACGTCCCCTGGCTCGACGAATTGCGCAAACTCCGCGTTGCCGAGCTCCGCCGCGACGTCCAACGCAGTGACGTTTCCATTCTGTCGTTGCAGTTGGAGGTGAAGAGGTTGGAGGAGGAGAAAGCGCAGGAAAAAGACTTAAAGGACGACGAGAAACCAGATCTGGCGGTTTCCGGCGAGTTGCGGCCGGAAAACGACAAAACCGGCGGAGAAGTGGAAGAGGCTGGACCGGCGAATTCCGAACCGGAGGAAAGAACCGCGAACAACACAGACAAGACGTTGCCAACCACGGGCGACGAATCAGACCGGGAGAACCAGTCGGTTAACGAGTCCAACTCGACCGGTTCGCGGTTCGAGAAAACCGGAGATGGCGACGCGAAGACCGGAACCGGACCGGATCCGGTTCATACCGGTTCGCAGGAACCGGATCCGGTCGAGCGGAAGGGAAAGCCGGTTGGAGAGGAATCGAATAACGGAAGCTACGATGCGTTGGCGAAGGTGCCAACGTGCGAGTCGGTGCCTCCGAGTGAGGGGAGGAAAGTGGAGGAAGACGATGACTCATCCGAGTTACATGACTCGGTGGCTCACTCGGGCGAAGGAGGGACGCGCGAGAGCAGCGAGGTGCAGAGCTCCGCGAGCTTAATGCGTAAGAGGAAGACGCGGCGGAGGAAGGAGGTTTCCGGAGCCACTGACGCCTCGTGTCCGGCGGAGAACGACGAGGCGGCGACGGTGAAATCAGAACCGTTGGTTGGGGTTTTGGAGTTGATCAAGGGGCACGAACACAGCTCATTGTTCGAGCGCCGTCTTGATAGCCAGCAGGATACGGATAGATACAAAGACCTAGTGAAACAGCCCATGGACTTGGAAACCATACAATTGAGACTCCAAAAGGGTCACTATTCCTCATGCACCAGTGCATTCTTCCGCGACCTCCTCCTCCTCTTCACCAACGCCACCGTGTTCTTCTCCCATGACTCCCTGGAATCGCAGGCGGGGCGGCAGCTGCACCGCCTTGCCACCGCGGAGATGAAGAACCACGGCCAAGCACAATCGGATCCTATCCCCCGGAAGAACGATTCACTCCCTCCAAATGCACCATTAGCTAAACCAGATTCTCTCCTTTCCAAGAACAAAGCCTCTGGTCCTATATTGGTTTGCCGCAAACGCAGTTCAATGTCATCCAAACCTTCCTCTGCCACCTTTGGCCAAAAGGGTGACCAACCCGTCTTCAATGACAAGAAGGAAAGGCCATCTTCTGATGCAAAGCCACCCATGAAGCCCTCTTCTTCTGATACAGACGAAGAGGAGCTTCCCAAAGCTAAGGAAAAGCCTGTTACTGGAGCAAGAAGCTTGAGGCGGAGCAACAAGAACCTCAATAGTAATAGTAGTAATAATAATAATAAGAAACCGTCCTCTATCTCCACTCCTAAGGCAGGGTCCTCGGGGAACAAGCCTTCGGAGACTGTTAAACCGGAAAAGAGCAAAGCAGAGGGGGGGGCAGACAAGAAGAGGAGTGCAGCTGCAGATTTCCTGAAACGGATTAAGCGCAACACTTCAGCGGAAGCATCGAAGGGTGGTAGTGGCGGTGGAAGCGGGGGTGGAGGAGGAGGAGGAGGAGGAAGTAGCAGCAGCAGCAAAGGTGGTGGAGGTGGTAATGGTGCCAAAGAGCAGAAGAAAATGGTGAACAATGGAAAGGGAGACAAAGGGAAAGAAAGGGCATCAAGGCATAATAACGTTGGAGGAGGTTCAGGCTCTGCGGATAAAAGGAATAATAAGAATATTGAGAACAGCTCTCAGTCAAAGAGGAGTGTTGGTAGACCTCCAAAGAAAGCAGCAGAGACAAATGCAGGTAGTGCAAAGCGTGGGAGAGAAAATAGTGCTAGTGCTGGAAAGGATAAGCGCCCCAAGAAACGTTCCAAGAAATGA
Predicted protein sequences of Glyma08g15870
>Glyma08g15870.1   sequence type=predicted peptide   gene model=Glyma08g15870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENHQNHKVEPEPDIEKNHNHRHQQQQHRNEAWGTWEELLLACAVNRHGFTDWDAVAMEVQSRTTRLLATARHCEQKFHDLSRRFAVQCNDDVPPPRQNGAAAAISDHVPWLDELRKLRVAELRRDVQRSDVSILSLQLEVKRLEEEKAQEKDLKDDEKPDLAVSGELRPENDKTGGEVEEAGPANSEPEERTANNTDKTLPTTGDESDRENQSVNESNSTGSRFEKTGDGDAKTGTGPDPVHTGSQEPDPVERKGKPVGEESNNGSYDALAKVPTCESVPPSEGRKVEEDDDSSELHDSVAHSGEGGTRESSEVQSSASLMRKRKTRRRKEVSGATDASCPAENDEAATVKSEPLVGVLELIKGHEHSSLFERRLDSQQDTDRYKDLVKQPMDLETIQLRLQKGHYSSCTSAFFRDLLLLFTNATVFFSHDSLESQAGRQLHRLATAEMKNHGQAQSDPIPRKNDSLPPNAPLAKPDSLLSKNKASGPILVCRKRSSMSSKPSSATFGQKGDQPVFNDKKERPSSDAKPPMKPSSSDTDEEELPKAKEKPVTGARSLRRSNKNLNSNSSNNNNKKPSSISTPKAGSSGNKPSETVKPEKSKAEGGADKKRSAAADFLKRIKRNTSAEASKGGSGGGSGGGGGGGGGSSSSSKGGGGGNGAKEQKKMVNNGKGDKGKERASRHNNVGGGSGSADKRNNKNIENSSQSKRSVGRPPKKAAETNAGSAKRGRENSASAGKDKRPKKRSKK*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo