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Report for Sequence Feature Glyma08g15771

Feature Type:gene_model
Chromosome:Gm08
Start:11476580
stop:11479222
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g15771
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G06710AT Annotation by Michelle Graham. TAIR10: homeobox from Arabidopsis thaliana | chr5:2068305-2070284 REVERSE LENGTH=336 SoyBaseE_val: 8.00E-85ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0043565GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding SoyBaseN/AISS
KOG0483 KOG Transcription factor HEX, contains HOX and HALZ domains JGI ISS
PTHR24326Panther FAMILY NOT NAMED JGI ISS
PTHR24326:SF218Panther JGI ISS
PF00046PFAM Homeobox domain JGI ISS
PF02183PFAM Homeobox associated leucine zipper JGI ISS
UniRef100_G7IJ30UniRef Annotation by Michelle Graham. Most informative UniRef hit: Homeobox-leucine zipper protein HAT14 n=1 Tax=Medicago truncatula RepID=G7IJ30_MEDTR SoyBaseE_val: 2.00E-145ISS
UniRef100_I1MJJ6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MJJ6_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g15771
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g15771 not represented in the dataset
Glyma08g15771 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g15771
ParalogEvidenceComments
Glyma15g42380 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g15771 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g148800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g15771
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g15771
>Glyma08g15771.1   sequence type=CDS   gene model=Glyma08g15771   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCTTGGTTTGAGCTTAGGAGACTCTTCAAGGCCTTTGCTTGGTTTCATGGAAAAGCCTCGTGAAGCCACCTCCAACCAACTGGGGTTAGGCTTCAACACAACGTTATCAATTGGTCCAATCATCACTAGACAAAAAGATCATCAACAAGATGAAGATGAAGAATACCAAGATGAAGAAACAAAGCCAAATAACAACAACAACACTCACAGAACAGAAGATCCTAATGACCTTTGTTCCAAACCCAACAACAACACAGTTCTGCATCAACTTGATTTTCTCCCTCAACTTGCTCTCCCATGGCACCCTCCTTCTGAAAACGGGAGTTTATCATCCGAGTTGGGAGGTTCTTCACGGGGGCTGGACGTGAACGTGCAACCTCCAGCGGCGGAGGACGAGGCGGCGCGGTCGTCGTCTCCGAACAGCGCCGCCTCGTCGTTTCAAATGGATCTCTGCATATACAACAGCAGAGGAGGGAGCTCTAATAAGAGGGACTTTGAGGGTGAGGCCTATGATCAAAGGACTTCTTCAAGAGCTAGCGATGATGATGACAATAATGGTAGTGGTGGTAACACCAGGAAGAAACTCAGACTCTCGAAGGAACAGTCTGCGTTCCTTGAAGAGAGTTTCAAGGAGCACAACACTCTTAATCCCAAACAAAAGCTTGCTCTTGCTAAACAACTCAATCTTCAACCTCGCCAAGTAGAAGTTTGGTTCCAAAACCGAAGAGCAAGGACTAAGTTGAAGCAAACAGAAGTGGATTGTGAGTACTTGAAGAGATGTTGTGAGACACTAACGGAAGAGAATAGAAGACTTCACAAGGAGCTTCAAGAATTGAGGGCTTTGAAGACTTCAAACCCATTCTACATGCAATTACCAGCCACTACTTTGACCATGTGCCCTTCTTGTGAACGCGTGGCCACAAATTCCACATCCACTTCCTCATCAATGAGTGCCACCATCAATGCTACTAATTCAGGAGCCACGGCCTGTGTCAAAACAGGTAATAACAATAACAACAATGACTCACCCTCCAAACCCATTGGATTCCCCTTTGGCAAACCCAGGTTCCACCCATTTGTTCACAGTAGCCAACAACAACTCCATCAGCACCAATCCTCAGCATCTTGA
Predicted protein sequences of Glyma08g15771
>Glyma08g15771.1   sequence type=predicted peptide   gene model=Glyma08g15771   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELGLSLGDSSRPLLGFMEKPREATSNQLGLGFNTTLSIGPIITRQKDHQQDEDEEYQDEETKPNNNNNTHRTEDPNDLCSKPNNNTVLHQLDFLPQLALPWHPPSENGSLSSELGGSSRGLDVNVQPPAAEDEAARSSSPNSAASSFQMDLCIYNSRGGSSNKRDFEGEAYDQRTSSRASDDDDNNGSGGNTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLQPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELRALKTSNPFYMQLPATTLTMCPSCERVATNSTSTSSSMSATINATNSGATACVKTGNNNNNNDSPSKPIGFPFGKPRFHPFVHSSQQQLHQHQSSAS*






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