Glyma08g15750 - SoyBase

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Report for Sequence Feature Glyma08g15750

Feature Type:	gene_model
Chromosome:	Gm08
Start:	11454127
stop:	11454552
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g15750

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G14200	AT	Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein \| chr1:4854532-4855071 REVERSE LENGTH=179	SoyBase	E_val: 3.00E-13	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0009408	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to heat	SoyBase	N/A	ISS
GO:0009644	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to high light intensity	SoyBase	N/A	ISS
GO:0034976	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress	SoyBase	N/A	ISS
GO:0042542	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR22763	Panther	RING ZINC FINGER PROTEIN	JGI		ISS
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI		ISS
UniRef100_G7IZ80	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RING finger protein n=1 Tax=Medicago truncatula RepID=G7IZ80_MEDTR	SoyBase	E_val: 2.00E-17	ISS
UniRef100_I1KTH3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KTH3_SOYBN	SoyBase	E_val: 2.00E-93	ISS

Expression Patterns of Glyma08g15750

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g15750 not represented in the dataset	Glyma08g15750 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g15750 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g148600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g15750

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g15750

Limit To All Plant Sequences

>Glyma08g15750.2   sequence type=CDS   gene model=Glyma08g15750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAATTGTTGATGATGCTAGCTATAATTCTTTGGATTTGGGACACAACAACTTGGAAAACAATGATGATGAAACTTTAACCGAAGAGGATATCTCTAATTTGATAGATTTATTACTTGAAGATGATACTTATATCTTTGATTTCATTGAGTTAGATGATGACAACCACAACACAGGAAACAATGGAGTTTCAAGAGTGGAATTTGCAAATCAAGTTAGTATTCAAAATCTTGAAAGGATCAGAATTCATGAAAATCCAGAGCAATCTTCAGACTTGATGTGTTCCATTTGTCTTGAGGAATTTTTGATTGGGACGATAACAATTCGCTTGCCCCACCCTTGCTATCACATCTTTCATGAACATTGTATAACAAGGTGGCTTAACATGAATAATACGTGTCCTTTGTGTCGTAGGACCATCTAG

Predicted protein sequences of Glyma08g15750

Limit To All Plant Sequences

>Glyma08g15750.2   sequence type=predicted peptide   gene model=Glyma08g15750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPIVDDASYNSLDLGHNNLENNDDETLTEEDISNLIDLLLEDDTYIFDFIELDDDNHNTGNNGVSRVEFANQVSIQNLERIRIHENPEQSSDLMCSICLEEFLIGTITIRLPHPCYHIFHEHCITRWLNMNNTCPLCRRTI*

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