SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G19860 | AT | Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:6904579-6905863 FORWARD LENGTH=284 | SoyBase | E_val: 1.00E-93 | ISS |
| GO:0006635 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation | SoyBase | N/A | ISS |
| GO:0016558 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| PTHR23042 | Panther | CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS | JGI | ISS | |
| PTHR23042:SF20 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00010 | PFAM | Helix-loop-helix DNA-binding domain | JGI | ISS | |
| UniRef100_B9STC8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9STC8_RICCO | SoyBase | E_val: 9.00E-104 | ISS |
| UniRef100_I1KTH1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KTH1_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma08g15740 not represented in the dataset |
Glyma08g15740 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g148500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g15740.2 sequence type=transcript gene model=Glyma08g15740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTCCATTCTTCTTGCCACAACAAATTCTCCATACTCGAACCTTCTAACCACAGCCATCCTAAGTTCAAATCCCTCTTCTTCATTGAACATGTCGTAAGCGTATTGGGGGAGGTAAACTCATTGCACTTAACAACACAACAAGCAAATCACATTAAACACCAAAAATACCTCCTCCACAAACCCATTTTTCCCATAACCAGATGGCAAAAAAGACCAAGAAACCGCATTTGGTTCAGAACTTCCGTCTGGGATACAAACCCAGGCAAGGTTGGGGAAGGGAATGCGGTGGCAAAGAGGAAATGTCATGGGTGTGAAAAAGGCTGTGGTAAAGAAAGTGATTCTTTTAGGTTGCAATACTTGAGAGGAAGGAGAAGAGAGAAGACGAGGAGGAAGGAGAAGGAAAAAACAAAACTTACAGTTTGTGGCCATTTGTAGCTACTAACACTATTGTAGTATCAAAATGAATTTTTTAAAAGATAAAGGACTGAAAAGATAAATAAGATAAGTGACCATTTGGCCAAATTTTTCTCATTTCAATATCCTAGCAGTCCTTGGATTTCAAACTCTAGGAAAAGAGATAATTGGAGAAATACGACAGCACGAATCCGTCGTTTCTTCAAACCGAAACGACAAGGCGATAAATTACCGTTTCGCTTTCCCTTTCTTTCTTTGAGAAGGCGTCGTAACAGAACACGACGACTCCTGAAGGAAGTGGGCAAAAATTGAAGATAAGGATCAGTGGCAGAGAGAGATAACGAACAAGCTAGCTATTTGGTTATGTTACTCAAAGGATTTACATATTAATCTTCTGCTGACTTCTGCTGAGTACAAAATTGAAAGCAAACAAGTTTTGGCTTCCAAAAGTACAAGACTACGAGTTGATAAGAACATATTCATCTACTGCCAAAGGCCTGAAGTTGAACCATGGATTGTTCAGCTGCAAGAAAAACACAAAAGGCTGACCGTGAAAAGTTAAGGAGGGATCGACTCAATGAACAATTCGTAGAACTGGGTAACATTTTAGACCCTGATAGGCCCAAAAATGACAAAGCAACCATTATAGGTGATACAATTCAATTGCTAAAGGACCTAACTTCTCAAGTTAGTAAACTCAAAGATGAATATGCTACGCTAAATGAAGAATCTCGTGAGTTGACTCAGGAGAAAAATGATCTCAGGGAAGAGAAGGCATCTCTTAAATCTGATATTGGCAACTTGAATAATCAGTATCAGCAGCAGCTGAGGACCATGTTTCCATGGACTGCAATGGATCATTCAGTTATGATGGCTCCACCATCATATCCATATCCAGTGCCAATGGCAGTACCTCCTGGTCCAATTCCCATGCAGCCATACCCCTTCTTTGCTAATCAACATCCTGCAGTCATCTCCAACCCCTGTTCAACTTATGTTCCTTATTTAGCCCCCAATACGATTGTTGAACAACAATCCACCCAATACGTATCCCCTCCACTACATCCTTGTGGTCGGTCCAATGTGTCAGGAAAACAAGAGTCCAAGAGCAAGTCATCCAGGGAGAGCAAGGCTGAAAAGAATGAGGATTCTAATGATGTCACTACAGACCTCGAGTTGAAGACTCCTGGGTCTTCTGCTGATCAGGATTTATCATCCAGACAAAGAAAATCCAGCAAGTTGTCAAGGAGGGAAAGCAGTTGCACAGAAGGAAGTTCATTAGGTAGGTGTTCTTCTTCTCGCAGTGTTCAGGACAGCTCATCGAGCAGTGTGGCGGCAAGCAGAAAGGATAATGAATGAAAAAGTAGACAAGTTAGTCAAGTTCTCATGCCTTGAAGCCGCTGAAATTTTTCATTGTGCATCTGCTGCTACTCTGGAGGTGTAAGTCATTCTGTTCTAATCCCAAAATAAAAGTCACTTCTGCTATCTCTTCCTGACCAAGAATTTGGTCCAAGTAGGTTTAAATCTTACATAATTTAAGCATAAACTTCCCCTTTTGGGGGAAAAACTTGAAATTTCAGCTGGAAAATCACCAAATTGACCAGTGTGGCTATCGTGTAGGTTTGTAAACTCTTTCATAGTTGTTAGAATGCATGATTCGATACAATTCAGCAAGCTAACAATTTGTATCATGCAATGAATTGTCGATGACTTTGATCTGTACAATACTTGCATTAATTGATGATATCAATGCAATTTCATATAGTCAGTACAAATCACTCAAGTCTGAAACTCATTATTTGTGTTGCTAATTCTCATCAAAGAAATTGGAAAGTCAAAATAAACACAGATTACTAA
>Glyma08g15740.1 sequence type=CDS gene model=Glyma08g15740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATTGTTCAGCTGCAAGAAAAACACAAAAGGCTGACCGTGAAAAGTTAAGGAGGGATCGACTCAATGAACAATTCGTAGAACTGGGTAACATTTTAGACCCTGATAGGCCCAAAAATGACAAAGCAACCATTATAGGTGATACAATTCAATTGCTAAAGGACCTAACTTCTCAAGTTAGTAAACTCAAAGATGAATATGCTACGCTAAATGAAGAATCTCGTGAGTTGACTCAGGAGAAAAATGATCTCAGGGAAGAGAAGGCATCTCTTAAATCTGATATTGGCAACTTGAATAATCAGTATCAGCAGCAGCTGAGGACCATGTTTCCATGGACTGCAATGGATCATTCAGTTATGATGGCTCCACCATCATATCCATATCCAGTGCCAATGGCAGTACCTCCTGGTCCAATTCCCATGCAGCCATACCCCTTCTTTGCTAATCAACATCCTGCAGTCATCTCCAACCCCTGTTCAACTTATGTTCCTTATTTAGCCCCCAATACGATTGTTGAACAACAATCCACCCAATACGTATCCCCTCCACTACATCCTTGTGGTCGGTCCAATGTGTCAGGAAAACAAGAGTCCAAGAGCAAGTCATCCAGGGAGAGCAAGGCTGAAAAGAATGAGGATTCTAATGATGTCACTACAGACCTCGAGTTGAAGACTCCTGGGTCTTCTGCTGATCAGGTTAGTGTTGTTTTCCAAGGATATCCCATGATAGAAGATGCATTGGATTCAAGTTGCGTGTGTCTCTGGTTTGCAGGATTTATCATCCAGACAAAGAAAATCCAGCAAGTTGTCAAGGAGGGAAAGCAGTTGCACAGAAGGAAGTTCATTAGGTAG >Glyma08g15740.2 sequence type=CDS gene model=Glyma08g15740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATTGTTCAGCTGCAAGAAAAACACAAAAGGCTGACCGTGAAAAGTTAAGGAGGGATCGACTCAATGAACAATTCGTAGAACTGGGTAACATTTTAGACCCTGATAGGCCCAAAAATGACAAAGCAACCATTATAGGTGATACAATTCAATTGCTAAAGGACCTAACTTCTCAAGTTAGTAAACTCAAAGATGAATATGCTACGCTAAATGAAGAATCTCGTGAGTTGACTCAGGAGAAAAATGATCTCAGGGAAGAGAAGGCATCTCTTAAATCTGATATTGGCAACTTGAATAATCAGTATCAGCAGCAGCTGAGGACCATGTTTCCATGGACTGCAATGGATCATTCAGTTATGATGGCTCCACCATCATATCCATATCCAGTGCCAATGGCAGTACCTCCTGGTCCAATTCCCATGCAGCCATACCCCTTCTTTGCTAATCAACATCCTGCAGTCATCTCCAACCCCTGTTCAACTTATGTTCCTTATTTAGCCCCCAATACGATTGTTGAACAACAATCCACCCAATACGTATCCCCTCCACTACATCCTTGTGGTCGGTCCAATGTGTCAGGAAAACAAGAGTCCAAGAGCAAGTCATCCAGGGAGAGCAAGGCTGAAAAGAATGAGGATTCTAATGATGTCACTACAGACCTCGAGTTGAAGACTCCTGGGTCTTCTGCTGATCAGGATTTATCATCCAGACAAAGAAAATCCAGCAAGTTGTCAAGGAGGGAAAGCAGTTGCACAGAAGGAAGTTCATTAGGTAGGTGTTCTTCTTCTCGCAGTGTTCAGGACAGCTCATCGAGCAGTGTGGCGGCAAGCAGAAAGGATAATGAATGA
>Glyma08g15740.1 sequence type=predicted peptide gene model=Glyma08g15740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDCSAARKTQKADREKLRRDRLNEQFVELGNILDPDRPKNDKATIIGDTIQLLKDLTSQVSKLKDEYATLNEESRELTQEKNDLREEKASLKSDIGNLNNQYQQQLRTMFPWTAMDHSVMMAPPSYPYPVPMAVPPGPIPMQPYPFFANQHPAVISNPCSTYVPYLAPNTIVEQQSTQYVSPPLHPCGRSNVSGKQESKSKSSRESKAEKNEDSNDVTTDLELKTPGSSADQVSVVFQGYPMIEDALDSSCVCLWFAGFIIQTKKIQQVVKEGKQLHRRKFIR* >Glyma08g15740.2 sequence type=predicted peptide gene model=Glyma08g15740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDCSAARKTQKADREKLRRDRLNEQFVELGNILDPDRPKNDKATIIGDTIQLLKDLTSQVSKLKDEYATLNEESRELTQEKNDLREEKASLKSDIGNLNNQYQQQLRTMFPWTAMDHSVMMAPPSYPYPVPMAVPPGPIPMQPYPFFANQHPAVISNPCSTYVPYLAPNTIVEQQSTQYVSPPLHPCGRSNVSGKQESKSKSSRESKAEKNEDSNDVTTDLELKTPGSSADQDLSSRQRKSSKLSRRESSCTEGSSLGRCSSSRSVQDSSSSSVAASRKDNE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
