SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g15610

Feature Type:gene_model
Chromosome:Gm08
Start:11342118
stop:11345688
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g15610
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G18680AT Annotation by Michelle Graham. TAIR10: Amino acid kinase family protein | chr3:6427533-6429520 FORWARD LENGTH=339 SoyBaseE_val: 3.00E-167ISS
GO:0006221GO-bp Annotation by Michelle Graham. GO Biological Process: pyrimidine nucleotide biosynthetic process SoyBaseN/AISS
GO:0006364GO-bp Annotation by Michelle Graham. GO Biological Process: rRNA processing SoyBaseN/AISS
GO:0006399GO-bp Annotation by Michelle Graham. GO Biological Process: tRNA metabolic process SoyBaseN/AISS
GO:0008652GO-bp Annotation by Michelle Graham. GO Biological Process: cellular amino acid biosynthetic process SoyBaseN/AISS
GO:0009073GO-bp Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family biosynthetic process SoyBaseN/AISS
GO:0009658GO-bp Annotation by Michelle Graham. GO Biological Process: chloroplast organization SoyBaseN/AISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0010027GO-bp Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization SoyBaseN/AISS
GO:0010228GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem SoyBaseN/AISS
GO:0016226GO-bp Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly SoyBaseN/AISS
GO:0045036GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to chloroplast SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0048481GO-bp Annotation by Michelle Graham. GO Biological Process: ovule development SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009041GO-mf Annotation by Michelle Graham. GO Molecular Function: uridylate kinase activity SoyBaseN/AISS
GO:0033862GO-mf Annotation by Michelle Graham. GO Molecular Function: UMP kinase activity SoyBaseN/AISS
PTHR26059Panther FAMILY NOT NAMED JGI ISS
PTHR26059:SF1Panther SUBFAMILY NOT NAMED JGI ISS
PF00696PFAM Amino acid kinase family JGI ISS
UniRef100_G7LD78UniRef Annotation by Michelle Graham. Most informative UniRef hit: Uridylate kinase n=1 Tax=Medicago truncatula RepID=G7LD78_MEDTR SoyBaseE_val: 3.00E-172ISS
UniRef100_I1KTG2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KTG2_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g15610
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g15610
ParalogEvidenceComments
Glyma05g32340 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g15610 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g147500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g15610
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g15610
>Glyma08g15610.1   sequence type=CDS   gene model=Glyma08g15610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACTCTCAACCCCTCTCTTCTCTTTCTCTTCTTCTTTTCTTCATTCATCTTCTCCTCTATGTCTTCCAAAGCCCCTCTTCCCTTATTTGACAGTGAGCAATTCAACCTTCCAGACCACCAGTCTCGCCGTTCGCTCCGAAATGGGTTCTTCCCCTGAGCCCATCAATTTCAGGAAGTCCGAGATTCCGTCCATGTCTCACTTGAGACTCTCAATGAACGAAAGTAGCAAGCCTTCATTTAAATGGCGAAGGGTTTTGCTCAAAGTTAGCGGAGAAGCACTTGCTGGAGACCACTCTCAGAACATTGACCCTAAGATAACCATGGCCATTGCAAGGGAGGTGGCAGCAGTGACTCGCCTTGGCATTGAGGTTGCACTGGTAGTTGGTGGGGGTAACATCTTCCGTGGATCCTCCTGGGCTGGAAGTAGCGGACTAGACCGCTCATCTGCTGATTATATTGGGATGTTGGCCACTGTTATGAATGCTATATTTCTTCAAGCAACAATGGAGAGTATAGGCATTCCTACTCGGGTGCAGACCGCATTTCGTATGTCTGAGGTTGCAGAACCGTATATTCGCAGAAGGGCAGTGAGGCATTTGGAAAAAGGAAGGGTTGTCATTTTTGCTGCTGGAACTGGAAATCCATTCTTTACCACAGACACTGCTGCAGCACTCCGATGTGCAGAAATTAATGCCGAGGTTGTACTCAAAGCAACAAACGTTGATGGAGTTTTTGATGAGGACCCAAAGCGTAATCCACAAGCACGTCTTCATGAGACACTAACCTATCAGGAGGTAACTTCCAAAGATCTGTCAGTGATGGACATGACTGCCATAACTTTATGCCAAGAAAATAATATTCCAGTTATTGTCTTTAATCTTAACAAACCTGGTAACATTGAGAAAGCTATTAAAGGAGAAAGAGTTGGCACTTTGATTGGGGCCACCTGGAATTCTACCGTATCAAGAGCATGA
Predicted protein sequences of Glyma08g15610
>Glyma08g15610.1   sequence type=predicted peptide   gene model=Glyma08g15610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALSTPLFSFSSSFLHSSSPLCLPKPLFPYLTVSNSTFQTTSLAVRSEMGSSPEPINFRKSEIPSMSHLRLSMNESSKPSFKWRRVLLKVSGEALAGDHSQNIDPKITMAIAREVAAVTRLGIEVALVVGGGNIFRGSSWAGSSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVFDEDPKRNPQARLHETLTYQEVTSKDLSVMDMTAITLCQENNIPVIVFNLNKPGNIEKAIKGERVGTLIGATWNSTVSRA*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo