Glyma08g15591 - SoyBase

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Report for Sequence Feature Glyma08g15591

Feature Type:	gene_model
Chromosome:	Gm08
Start:	11327980
stop:	11331811
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g15591

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
PF03195	PFAM	Protein of unknown function DUF260	JGI		ISS
UniRef100_G7K3J3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: LOB domain-containing protein n=1 Tax=Medicago truncatula RepID=G7K3J3_MEDTR	SoyBase	E_val: 1.00E-19	ISS
UniRef100_I1KTG0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KTG0_SOYBN	SoyBase	E_val: 5.00E-54	ISS

Expression Patterns of Glyma08g15591

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g15591 not represented in the dataset	Glyma08g15591 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g15591

Paralog	Evidence	Comments
Glyma05g32320	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g15591 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g147300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g15591

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g15591

Limit To All Plant Sequences

>Glyma08g15591.2   sequence type=transcript   gene model=Glyma08g15591   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTGATTCATGGCCCTTTCTCATTTTAGACTCTTAATTTTAATATTTTTCTTTTGCATTGCAATATTGAAAAAGTAGCCGTTAAGATTTTTTCTATGGGTATAAACCTACTACAATACAAATATTCTTGGCAACTAAAACATCAAATCTTATATAAGATACCCTCCTCTCTATCACAGGAGCACAATATAAAGAGAAGAAATCTTTCTTGGATGCCAAATATTTTCTTATGATTTCTTTTCTTTTTTTTAAAAAAAAAATTGATATCATGATGTCTGGTAGCAAATTCCACCATACTTACGTGAACAACCTGCAAATACTTTATTTTGAAGCACATTGTAGGATTCAAGGCCCTATTTATGGATGTGCTGGGATTATCTTTAAATTATATGAACAAATCAACAGTGCCGAAATTGCACTTGCGTATATCGATATCCAAACTCAAACTGCTTGTCACAAGCTTCAAGCTGAATCAAACTTTGATGTCTTGCCAGCACAAAGTAGCATCACAGCAAAGTTTCAATGGAAAAGTGAATTGGAGTGATGGTTGTGTGGCCTTATAATGAGATCATGATGAGATAACAGAATCTATGTGCAATTATTATCTCGTATTATTATCTTGTGATCATGTAAATCAATTTGTTTAGTCTAGACATGATCTTAAGAGTTTTATTTGAAGAATCAATCTGTATAATTCAATCTTAGAAGATTTTGTTGTAACTCTCTTGTGTATATTTATGCCTTAGCAAAGCATGAAATACAAAACAAAATTATTCTGTCATAAAATCCTTTATGGCATCAGAGTCAACAGGTTTTGTTTGAAATTTAGTGGCAATGAGTCATTGTGAAGAGGAGACTCCTAAGAATGAGTCTCATAAGCAAGAAGAACATAAGATGGTGAAGAAGACTTCATCACTGCATGAATTGAATTCCAATGACAACCCGAGAAATTTGATTACTCAAGTGCGTGCAATAAGGAGACAGTTCAGGCTTGACTGGGCTTACTACAAAGCAGTGGCAGACGCTGATAGAATTACTAAATGCTTAGAAAACAAACTATAATAACAAGATGACATGTGAGCGTGATACCAATACATGGATAATTGACATAGGGGCTTCCAACCACATGACTGGAAACCTAAATCATATGCATGAACTGCAAAACATTCAAAGTTGTCCAGTTGGACTTCCTAATGGATAACATACGACA

Coding sequences of Glyma08g15591

Limit To All Plant Sequences

>Glyma08g15591.1   sequence type=CDS   gene model=Glyma08g15591   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTTCTTTTCTTTTTTTTAAAAAAAAAATTGATATCATGATGTCTGGTAGCAAATTCCACCATACTTACGTGAACAACCTGCAAATACTTTATTTTGAAGCACATTGTAGGATTCAAGGCCCTATTTATGGATGTGCTGGGATTATCTTTAAATTATATGAACAAATCAACAGTGCCGAAATTGCACTTGCGTATATCGATATCCAAACTCAAACTGCTTGTCACAAGCTTCAAGCTGAATCAAACTTTGATGTCTTGCCAGCACAAAGTAGCATCACAGCAAAGTTTCAATGGAAAAGACCGTATTTCAAGGACGCTGATTGGAGCAGGTGA

>Glyma08g15591.2   sequence type=CDS   gene model=Glyma08g15591   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTTCTTTTCTTTTTTTTAAAAAAAAAATTGATATCATGATGTCTGGTAGCAAATTCCACCATACTTACGTGAACAACCTGCAAATACTTTATTTTGAAGCACATTGTAGGATTCAAGGCCCTATTTATGGATGTGCTGGGATTATCTTTAAATTATATGAACAAATCAACAGTGCCGAAATTGCACTTGCGTATATCGATATCCAAACTCAAACTGCTTGTCACAAGCTTCAAGCTGAATCAAACTTTGATGTCTTGCCAGCACAAAGTAGCATCACAGCAAAGTTTCAATGGAAAAGTGAATTGGAGTGA

Predicted protein sequences of Glyma08g15591

Limit To All Plant Sequences

>Glyma08g15591.1   sequence type=predicted peptide   gene model=Glyma08g15591   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MISFLFFKKKIDIMMSGSKFHHTYVNNLQILYFEAHCRIQGPIYGCAGIIFKLYEQINSAEIALAYIDIQTQTACHKLQAESNFDVLPAQSSITAKFQWKRPYFKDADWSR*

>Glyma08g15591.2   sequence type=predicted peptide   gene model=Glyma08g15591   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MISFLFFKKKIDIMMSGSKFHHTYVNNLQILYFEAHCRIQGPIYGCAGIIFKLYEQINSAEIALAYIDIQTQTACHKLQAESNFDVLPAQSSITAKFQWKSELE*

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